BLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: new_229E_NL63.fasta
           20 sequences; 547,632 total letters



Query= Corn_NL_S726

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

KT266906.1_Human_coronavirus_NL63_isolate_HCoV_NL63/Haiti-1/2015,_complete_genome  ...  34.4    2e-04
KX179500.1_Human_coronavirus_NL63_strain_NL63/UF-2/2015,_complete_genome  ...  34.4    2e-04
KY829118.1_Human_coronavirus_NL63_strain_N07-262B,_complete_genome    34.4    2e-04
KY983586.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC2940/2015,_complete_genome  ...  34.4    2e-04
KY554967.1_Human_coronavirus_NL63_strain_N06-1144B,_complete_genome  ...  34.4    2e-04
MK334047.1_Human_coronavirus_NL63_strain_ChinaGD04,_complete_genome  ...  34.4    2e-04
MK334045.1_Human_coronavirus_NL63_strain_ChinaGD05,_complete_genome  ...  34.4    2e-04
MK334043.1_Human_coronavirus_NL63_strain_ChinaGD02,_complete_genome  ...  34.4    2e-04
MN306040.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC0768/2019,_complete_genome  ...  34.4    2e-04
MN306018.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC0179/2018,_complete_genome  ...  34.4    2e-04
KY369912.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC9731/2016,_complete_genome  ...  34.4    2e-04
KY674919.1_Human_coronavirus_229E_strain_N08-434B,_complete_genome    34.4    2e-04
KY996417.1_Human_coronavirus_229E_strain_229E/UF-1/2016,_complete_genome  ...  34.4    2e-04
MF542265.1_Human_coronavirus_229E_strain_229E/Haiti-1/2016,_complete_genome  ...  34.4    2e-04
MT438696.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/UNM_0186/2016,_complete_genome  ...  34.4    2e-04
KY684760.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC2282/2017,_complete_genome  ...  34.4    2e-04
MN306046.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC0865/2019,_complete_genome  ...  34.4    2e-04
MN369046.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC9724/2018,_complete_genome  ...  34.4    2e-04
MT438700.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/UAMS_DID_0108/2017,_complete_genome  ...  34.4    2e-04
MT438697.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/ACRI_0244/2017,_complete_genome  ...  34.4    2e-04



Query_1                                                                                      1      GTGTGCTATAGGMCCYGATG  20
KT266906.1_Human_coronavirus_NL63_isolate_HCoV_NL63/Haiti-1/2015,_complete_genome            16485  ............C..T....  16504
KX179500.1_Human_coronavirus_NL63_strain_NL63/UF-2/2015,_complete_genome                     16485  ............C..T....  16504
KY829118.1_Human_coronavirus_NL63_strain_N07-262B,_complete_genome                           16445  ............C..T....  16464
KY983586.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC2940/2015,_complete_genome  16439  ............C..T....  16458
KY554967.1_Human_coronavirus_NL63_strain_N06-1144B,_complete_genome                          16455  ............C..T....  16474
MK334047.1_Human_coronavirus_NL63_strain_ChinaGD04,_complete_genome                          16467  ............C..T....  16486
MK334045.1_Human_coronavirus_NL63_strain_ChinaGD05,_complete_genome                          16484  ............C..T....  16503
MK334043.1_Human_coronavirus_NL63_strain_ChinaGD02,_complete_genome                          16481  ............C..T....  16500
MN306040.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC0768/2019,_complete_genome  16470  ............C..T....  16489
MN306018.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC0179/2018,_complete_genome  16440  ............C..T....  16459
KY369912.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC9731/2016,_complete_genome  16537  ............A..C....  16556
KY674919.1_Human_coronavirus_229E_strain_N08-434B,_complete_genome                           16434  ............A..C....  16453
KY996417.1_Human_coronavirus_229E_strain_229E/UF-1/2016,_complete_genome                     16582  ............A..C....  16601
MF542265.1_Human_coronavirus_229E_strain_229E/Haiti-1/2016,_complete_genome                  16583  ............A..C....  16602
MT438696.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/UNM_0186/2016,_complete_genome       16551  ............A..C....  16570
KY684760.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC2282/2017,_complete_genome  16581  ............A..C....  16600
MN306046.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC0865/2019,_complete_genome  16583  ............A..C....  16602
MN369046.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC9724/2018,_complete_genome  16423  ............A..C....  16442
MT438700.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/UAMS_DID_0108/2017,_complete_genome  16560  ............A..C....  16579
MT438697.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/ACRI_0244/2017,_complete_genome      16559  ............A..C....  16578


Lambda      K        H
    1.47    0.726     1.39 

Gapped
Lambda      K        H
    1.47    0.726     1.39 

Effective search space used: 5474320


Query= Corn_NL_A1004

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

KT266906.1_Human_coronavirus_NL63_isolate_HCoV_NL63/Haiti-1/2015,_complete_genome  ...  34.4    2e-04
KX179500.1_Human_coronavirus_NL63_strain_NL63/UF-2/2015,_complete_genome  ...  34.4    2e-04
KY829118.1_Human_coronavirus_NL63_strain_N07-262B,_complete_genome    34.4    2e-04
KY983586.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC2940/2015,_complete_genome  ...  34.4    2e-04
KY554967.1_Human_coronavirus_NL63_strain_N06-1144B,_complete_genome  ...  34.4    2e-04
MK334047.1_Human_coronavirus_NL63_strain_ChinaGD04,_complete_genome  ...  34.4    2e-04
MK334045.1_Human_coronavirus_NL63_strain_ChinaGD05,_complete_genome  ...  34.4    2e-04
MK334043.1_Human_coronavirus_NL63_strain_ChinaGD02,_complete_genome  ...  34.4    2e-04
MN306040.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC0768/2019,_complete_genome  ...  34.4    2e-04
MN306018.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC0179/2018,_complete_genome  ...  34.4    2e-04
KY369912.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC9731/2016,_complete_genome  ...  34.4    2e-04
KY674919.1_Human_coronavirus_229E_strain_N08-434B,_complete_genome    34.4    2e-04
KY996417.1_Human_coronavirus_229E_strain_229E/UF-1/2016,_complete_genome  ...  34.4    2e-04
MF542265.1_Human_coronavirus_229E_strain_229E/Haiti-1/2016,_complete_genome  ...  34.4    2e-04
MT438696.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/UNM_0186/2016,_complete_genome  ...  34.4    2e-04
KY684760.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC2282/2017,_complete_genome  ...  34.4    2e-04
MN306046.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC0865/2019,_complete_genome  ...  34.4    2e-04
MN369046.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC9724/2018,_complete_genome  ...  34.4    2e-04
MT438700.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/UAMS_DID_0108/2017,_complete_genome  ...  34.4    2e-04
MT438697.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/ACRI_0244/2017,_complete_genome  ...  34.4    2e-04



Query_2                                                                                      1      GCWACATAATTYTGACTATT  20
KT266906.1_Human_coronavirus_NL63_isolate_HCoV_NL63/Haiti-1/2015,_complete_genome            16763  ..A........C........  16744
KX179500.1_Human_coronavirus_NL63_strain_NL63/UF-2/2015,_complete_genome                     16763  ..A........C........  16744
KY829118.1_Human_coronavirus_NL63_strain_N07-262B,_complete_genome                           16723  ..A........C........  16704
KY983586.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC2940/2015,_complete_genome  16717  ..A........C........  16698
KY554967.1_Human_coronavirus_NL63_strain_N06-1144B,_complete_genome                          16733  ..A........C........  16714
MK334047.1_Human_coronavirus_NL63_strain_ChinaGD04,_complete_genome                          16745  ..A........C........  16726
MK334045.1_Human_coronavirus_NL63_strain_ChinaGD05,_complete_genome                          16762  ..A........C........  16743
MK334043.1_Human_coronavirus_NL63_strain_ChinaGD02,_complete_genome                          16759  ..A........C........  16740
MN306040.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC0768/2019,_complete_genome  16748  ..A........C........  16729
MN306018.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC0179/2018,_complete_genome  16718  ..A........C........  16699
KY369912.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC9731/2016,_complete_genome  16815  ..T........T........  16796
KY674919.1_Human_coronavirus_229E_strain_N08-434B,_complete_genome                           16712  ..T........T........  16693
KY996417.1_Human_coronavirus_229E_strain_229E/UF-1/2016,_complete_genome                     16860  ..T........T........  16841
MF542265.1_Human_coronavirus_229E_strain_229E/Haiti-1/2016,_complete_genome                  16861  ..T........T........  16842
MT438696.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/UNM_0186/2016,_complete_genome       16829  ..T........T........  16810
KY684760.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC2282/2017,_complete_genome  16859  ..T........T........  16840
MN306046.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC0865/2019,_complete_genome  16861  ..T........T........  16842
MN369046.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC9724/2018,_complete_genome  16701  ..T........T........  16682
MT438700.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/UAMS_DID_0108/2017,_complete_genome  16838  ..T........T........  16819
MT438697.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/ACRI_0244/2017,_complete_genome      16837  ..T........T........  16818


Lambda      K        H
    1.47    0.726     1.39 

Gapped
Lambda      K        H
    1.47    0.726     1.39 

Effective search space used: 5474320


Query= Corn_711NL_BC1

Length=26
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

KT266906.1_Human_coronavirus_NL63_isolate_HCoV_NL63/Haiti-1/2015,_complete_genome  ...  48.5    2e-08
KX179500.1_Human_coronavirus_NL63_strain_NL63/UF-2/2015,_complete_genome  ...  48.5    2e-08
KY829118.1_Human_coronavirus_NL63_strain_N07-262B,_complete_genome    48.5    2e-08
KY983586.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC2940/2015,_complete_genome  ...  48.5    2e-08
KY554967.1_Human_coronavirus_NL63_strain_N06-1144B,_complete_genome  ...  48.5    2e-08
MK334047.1_Human_coronavirus_NL63_strain_ChinaGD04,_complete_genome  ...  48.5    2e-08
MK334043.1_Human_coronavirus_NL63_strain_ChinaGD02,_complete_genome  ...  48.5    2e-08
MN306040.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC0768/2019,_complete_genome  ...  48.5    2e-08
MN306018.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC0179/2018,_complete_genome  ...  48.5    2e-08
KY369912.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC9731/2016,_complete_genome  ...  48.5    2e-08
KY674919.1_Human_coronavirus_229E_strain_N08-434B,_complete_genome    48.5    2e-08
KY996417.1_Human_coronavirus_229E_strain_229E/UF-1/2016,_complete_genome  ...  48.5    2e-08
MF542265.1_Human_coronavirus_229E_strain_229E/Haiti-1/2016,_complete_genome  ...  48.5    2e-08
MT438696.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/UNM_0186/2016,_complete_genome  ...  48.5    2e-08
KY684760.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC2282/2017,_complete_genome  ...  48.5    2e-08
MN306046.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC0865/2019,_complete_genome  ...  48.5    2e-08
MN369046.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC9724/2018,_complete_genome  ...  48.5    2e-08
MT438700.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/UAMS_DID_0108/2017,_complete_genome  ...  48.5    2e-08
MT438697.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/ACRI_0244/2017,_complete_genome  ...  48.5    2e-08
MK334045.1_Human_coronavirus_NL63_strain_ChinaGD05,_complete_genome  ...  31.8    0.002



Query_3                                                                                      3      AGATGTCCTGCTGAAATAGTTAA  25
KT266906.1_Human_coronavirus_NL63_isolate_HCoV_NL63/Haiti-1/2015,_complete_genome            16525  .......................  16547
KX179500.1_Human_coronavirus_NL63_strain_NL63/UF-2/2015,_complete_genome                     16525  .......................  16547
KY829118.1_Human_coronavirus_NL63_strain_N07-262B,_complete_genome                           16485  .......................  16507
KY983586.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC2940/2015,_complete_genome  16479  .......................  16501
KY554967.1_Human_coronavirus_NL63_strain_N06-1144B,_complete_genome                          16495  .......................  16517
MK334047.1_Human_coronavirus_NL63_strain_ChinaGD04,_complete_genome                          16507  .......................  16529
MK334043.1_Human_coronavirus_NL63_strain_ChinaGD02,_complete_genome                          16521  .......................  16543
MN306040.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC0768/2019,_complete_genome  16510  .......................  16532
MN306018.1_Human_coronavirus_NL63_strain_HCoV_NL63/Seattle/USA/SC0179/2018,_complete_genome  16480  .......................  16502
KY369912.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC9731/2016,_complete_genome  16577  .......................  16599
KY674919.1_Human_coronavirus_229E_strain_N08-434B,_complete_genome                           16474  .......................  16496
KY996417.1_Human_coronavirus_229E_strain_229E/UF-1/2016,_complete_genome                     16622  .......................  16644
MF542265.1_Human_coronavirus_229E_strain_229E/Haiti-1/2016,_complete_genome                  16623  .......................  16645
MT438696.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/UNM_0186/2016,_complete_genome       16591  .......................  16613
KY684760.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC2282/2017,_complete_genome  16621  .......................  16643
MN306046.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC0865/2019,_complete_genome  16623  .......................  16645
MN369046.1_Human_coronavirus_229E_strain_HCoV_229E/Seattle/USA/SC9724/2018,_complete_genome  16463  .......................  16485
MT438700.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/UAMS_DID_0108/2017,_complete_genome  16600  .......................  16622
MT438697.1_Human_coronavirus_229E_isolate_HCoV-229E/USA/ACRI_0244/2017,_complete_genome      16599  .......................  16621
MK334045.1_Human_coronavirus_NL63_strain_ChinaGD05,_complete_genome                          16524  ....A......A...........  16546


Lambda      K        H
    1.45    0.722     1.37 

Gapped
Lambda      K        H
    1.45    0.722     1.37 

Effective search space used: 8211180


  Database: new_229E_NL63.fasta
    Posted date:  Jun 9, 2020  4:38 PM
  Number of letters in database: 547,632
  Number of sequences in database:  20



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2
BLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: new_CA6_sequence.fasta
           10 sequences; 73,942 total letters



Query= CA6_VP1_S1151

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

MF285683.1_Coxsackievirus_A6_isolate_CVA6/S4103/BJ/CHN/2016,_complete_genome  ...  37.4    5e-06
MK510082.1_Coxsackievirus_A6_strain_USA/CA-2016-RGDS-1009,_complete_genome  ...  37.4    5e-06
MH539786.1_Coxsackievirus_A6_isolate_CVA6/Kozhikode/MCVRAF0722/2016,_complete_genome  ...  37.4    5e-06
MH371303.1_Coxsackievirus_A6_isolate_DG-04,_complete_genome           37.4    5e-06
MH536772.2_Coxsackievirus_A6_strain_XS-45,_complete_genome            37.4    5e-06
MN689954.1_Coxsackievirus_A6_isolate_17ES4/QD/CHN/2017,_complete_genome  ...  37.4    5e-06
MN032612.1_Coxsackievirus_A6_isolate_CVA6/sHFMD02/Shenzhen/2018,_complete_genome  ...  37.4    5e-06
LC530049.1_Coxsackievirus_A6_sugckmmaht_NGO2_genomic_RNA,_complete_genome  ...  37.4    5e-06
MK791146.1_Coxsackievirus_A6_isolate_ADC1704,_complete_genome         37.4    5e-06
MK652140.1_Coxsackievirus_A6_strain_VEN/2018-23120,_complete_genome  ...  31.2    3e-04



Query_1                                                                               1     CAATCCACAATGGTYGGTCA  20
MF285683.1_Coxsackievirus_A6_isolate_CVA6/S4103/BJ/CHN/2016,_complete_genome          2005  ..............C.....  2024
MK510082.1_Coxsackievirus_A6_strain_USA/CA-2016-RGDS-1009,_complete_genome            1919  ..............T.....  1938
MH539786.1_Coxsackievirus_A6_isolate_CVA6/Kozhikode/MCVRAF0722/2016,_complete_genome  1945  ..............C.....  1964
MH371303.1_Coxsackievirus_A6_isolate_DG-04,_complete_genome                           1992  ..............T.....  2011
MH536772.2_Coxsackievirus_A6_strain_XS-45,_complete_genome                            2006  ..............C.....  2025
MN689954.1_Coxsackievirus_A6_isolate_17ES4/QD/CHN/2017,_complete_genome               2006  ..............C.....  2025
MN032612.1_Coxsackievirus_A6_isolate_CVA6/sHFMD02/Shenzhen/2018,_complete_genome      1960  ..............C.....  1979
LC530049.1_Coxsackievirus_A6_sugckmmaht_NGO2_genomic_RNA,_complete_genome             1960  ..............C.....  1979
MK791146.1_Coxsackievirus_A6_isolate_ADC1704,_complete_genome                         2005  ..............C.....  2024
MK652140.1_Coxsackievirus_A6_strain_VEN/2018-23120,_complete_genome                   1904  ..............T..     1920


Lambda      K        H
    1.42    0.718     1.34 

Gapped
Lambda      K        H
    1.42    0.718     1.34 

Effective search space used: 812372


Query= CA6_VP1_A1409

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

MF285683.1_Coxsackievirus_A6_isolate_CVA6/S4103/BJ/CHN/2016,_complete_genome  ...  40.1    6e-07
MK510082.1_Coxsackievirus_A6_strain_USA/CA-2016-RGDS-1009,_complete_genome  ...  40.1    6e-07
MH539786.1_Coxsackievirus_A6_isolate_CVA6/Kozhikode/MCVRAF0722/2016,_complete_genome  ...  40.1    6e-07
MH536772.2_Coxsackievirus_A6_strain_XS-45,_complete_genome            40.1    6e-07
MK652140.1_Coxsackievirus_A6_strain_VEN/2018-23120,_complete_genome  ...  40.1    6e-07
MN689954.1_Coxsackievirus_A6_isolate_17ES4/QD/CHN/2017,_complete_genome  ...  40.1    6e-07
MK791146.1_Coxsackievirus_A6_isolate_ADC1704,_complete_genome         40.1    6e-07
MH371303.1_Coxsackievirus_A6_isolate_DG-04,_complete_genome           32.2    1e-04
MN032612.1_Coxsackievirus_A6_isolate_CVA6/sHFMD02/Shenzhen/2018,_complete_genome  ...  28.2    0.002
LC530049.1_Coxsackievirus_A6_sugckmmaht_NGO2_genomic_RNA,_complete_genome  ...  28.2    0.002



Query_2                                                                               1     CAGTCTTAACTGCTCTAAAA  20
MF285683.1_Coxsackievirus_A6_isolate_CVA6/S4103/BJ/CHN/2016,_complete_genome          2263  ....................  2244
MK510082.1_Coxsackievirus_A6_strain_USA/CA-2016-RGDS-1009,_complete_genome            2177  ....................  2158
MH539786.1_Coxsackievirus_A6_isolate_CVA6/Kozhikode/MCVRAF0722/2016,_complete_genome  2203  ....................  2184
MH536772.2_Coxsackievirus_A6_strain_XS-45,_complete_genome                            2264  ....................  2245
MK652140.1_Coxsackievirus_A6_strain_VEN/2018-23120,_complete_genome                   2162  ....................  2143
MN689954.1_Coxsackievirus_A6_isolate_17ES4/QD/CHN/2017,_complete_genome               2264  ....................  2245
MK791146.1_Coxsackievirus_A6_isolate_ADC1704,_complete_genome                         2263  ....................  2244
MH371303.1_Coxsackievirus_A6_isolate_DG-04,_complete_genome                           2250  ..........C.........  2231
MN032612.1_Coxsackievirus_A6_isolate_CVA6/sHFMD02/Shenzhen/2018,_complete_genome      2216    ..............      2203
LC530049.1_Coxsackievirus_A6_sugckmmaht_NGO2_genomic_RNA,_complete_genome             2216    ..............      2203


Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 738420


Query= CA6_1151VP_BC2

Length=26
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

MF285683.1_Coxsackievirus_A6_isolate_CVA6/S4103/BJ/CHN/2016,_complete_genome  ...  49.3    2e-09
MK510082.1_Coxsackievirus_A6_strain_USA/CA-2016-RGDS-1009,_complete_genome  ...  49.3    2e-09
MH539786.1_Coxsackievirus_A6_isolate_CVA6/Kozhikode/MCVRAF0722/2016,_complete_genome  ...  49.3    2e-09
MH371303.1_Coxsackievirus_A6_isolate_DG-04,_complete_genome           49.3    2e-09
MH536772.2_Coxsackievirus_A6_strain_XS-45,_complete_genome            49.3    2e-09
MN032612.1_Coxsackievirus_A6_isolate_CVA6/sHFMD02/Shenzhen/2018,_complete_genome  ...  43.2    1e-07
LC530049.1_Coxsackievirus_A6_sugckmmaht_NGO2_genomic_RNA,_complete_genome  ...  43.2    1e-07
MK791146.1_Coxsackievirus_A6_isolate_ADC1704,_complete_genome         43.2    1e-07
MN689954.1_Coxsackievirus_A6_isolate_17ES4/QD/CHN/2017,_complete_genome  ...  41.2    5e-07
MK652140.1_Coxsackievirus_A6_strain_VEN/2018-23120,_complete_genome  ...  33.0    1e-04



Query_3                                                                               1     ACACCACCTGGTAGTGCYCAGCCCGC  26
MF285683.1_Coxsackievirus_A6_isolate_CVA6/S4103/BJ/CHN/2016,_complete_genome          2122  .................T........  2147
MK510082.1_Coxsackievirus_A6_strain_USA/CA-2016-RGDS-1009,_complete_genome            2036  .................T........  2061
MH539786.1_Coxsackievirus_A6_isolate_CVA6/Kozhikode/MCVRAF0722/2016,_complete_genome  2062  .................T........  2087
MH371303.1_Coxsackievirus_A6_isolate_DG-04,_complete_genome                           2109  .................T........  2134
MH536772.2_Coxsackievirus_A6_strain_XS-45,_complete_genome                            2123  .................T........  2148
MN032612.1_Coxsackievirus_A6_isolate_CVA6/sHFMD02/Shenzhen/2018,_complete_genome      2080     ..............T........  2102
LC530049.1_Coxsackievirus_A6_sugckmmaht_NGO2_genomic_RNA,_complete_genome             2080     ..............T........  2102
MK791146.1_Coxsackievirus_A6_isolate_ADC1704,_complete_genome                         2122  .................T.....     2144
MN689954.1_Coxsackievirus_A6_isolate_17ES4/QD/CHN/2017,_complete_genome               2123  ..............C..T........  2148
MK652140.1_Coxsackievirus_A6_strain_VEN/2018-23120,_complete_genome                   2021  .....G...........T..A.....  2046


Lambda      K        H
    1.41    0.716     1.34 

Gapped
Lambda      K        H
    1.41    0.716     1.34 

Effective search space used: 1181472


  Database: new_CA6_sequence.fasta
    Posted date:  Jun 9, 2020  4:38 PM
  Number of letters in database: 73,942
  Number of sequences in database:  10



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2

BLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: new_CA16_sequence.fasta
           10 sequences; 73,555 total letters



Query= CA16_VP1_S421

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

KY425529.1_Coxsackievirus_A16_strain_V1/YN/CHN/2015,_complete_genome  ...  34.4    4e-05
MH010201.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen289/CHN/2016,_complete_genome  ...  34.4    4e-05
MG957117.1_Coxsackievirus_A16_strain_SH-HP-16-51,_complete_genome     34.4    4e-05
MH010206.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen220/CHN/2017,_complete_genome  ...  34.4    4e-05
MH010204.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen174/CHN/2017,_complete_genome  ...  34.4    4e-05
MH010202.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen76/CHN/2017,_complete_genome  ...  34.4    4e-05
MH010200.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen87/CHN/2016,_complete_genome  ...  32.3    2e-04
MN749141.1_Coxsackievirus_A16_strain_12C10,_complete_genome           30.2    7e-04
KY674980.1_Coxsackievirus_A16_strain_16E4-,_complete_genome           30.2    7e-04
MF189180.1_Coxsackievirus_A16_strain_USA/CT/2016-19518,_complete_genome  ...  30.2    7e-04



Query_1                                                                            1     CTATACAYATACCAGGRGAA  20
KY425529.1_Coxsackievirus_A16_strain_V1/YN/CHN/2015,_complete_genome               1812  .......T........G...  1831
MH010201.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen289/CHN/2016,_complete_genome  1757  .......T........G...  1776
MG957117.1_Coxsackievirus_A16_strain_SH-HP-16-51,_complete_genome                  1712  .......T........A...  1731
MH010206.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen220/CHN/2017,_complete_genome  1758  .......T........G...  1777
MH010204.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen174/CHN/2017,_complete_genome  1768  .......C........G...  1787
MH010202.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen76/CHN/2017,_complete_genome   1813  .......T........G...  1832
MH010200.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen87/CHN/2016,_complete_genome   1813  .......T........G..   1831
MN749141.1_Coxsackievirus_A16_strain_12C10,_complete_genome                        1813    .....C........G...  1830
KY674980.1_Coxsackievirus_A16_strain_16E4-,_complete_genome                        1733    .....C........G...  1750
MF189180.1_Coxsackievirus_A16_strain_USA/CT/2016-19518,_complete_genome            1813    .....C........A...  1830


Lambda      K        H
    1.47    0.726     1.39 

Gapped
Lambda      K        H
    1.47    0.726     1.39 

Effective search space used: 808115


Query= CA16_VP1_A544

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

MH010201.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen289/CHN/2016,_complete_genome  ...  37.4    5e-06
MH010206.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen220/CHN/2017,_complete_genome  ...  37.4    5e-06
MH010204.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen174/CHN/2017,_complete_genome  ...  37.4    5e-06
MN749141.1_Coxsackievirus_A16_strain_12C10,_complete_genome           31.2    3e-04
KY674980.1_Coxsackievirus_A16_strain_16E4-,_complete_genome           31.2    3e-04
MF189180.1_Coxsackievirus_A16_strain_USA/CT/2016-19518,_complete_genome  ...  31.2    3e-04
KY425529.1_Coxsackievirus_A16_strain_V1/YN/CHN/2015,_complete_genome  ...  29.2    0.001
MH010200.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen87/CHN/2016,_complete_genome  ...  29.2    0.001
MH010202.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen76/CHN/2017,_complete_genome  ...  29.2    0.001



Query_2                                                                            1     GACACTGGAAARCACAAGCG  20
MH010201.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen289/CHN/2016,_complete_genome  1880  ...........A........  1861
MH010206.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen220/CHN/2017,_complete_genome  1881  ...........G........  1862
MH010204.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen174/CHN/2017,_complete_genome  1891  ...........G........  1872
MN749141.1_Coxsackievirus_A16_strain_12C10,_complete_genome                        1931     ........G........  1915
KY674980.1_Coxsackievirus_A16_strain_16E4-,_complete_genome                        1851     ........G........  1835
MF189180.1_Coxsackievirus_A16_strain_USA/CT/2016-19518,_complete_genome            1931     ........G........  1915
KY425529.1_Coxsackievirus_A16_strain_V1/YN/CHN/2015,_complete_genome               1935  ........G..A........  1916
MH010200.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen87/CHN/2016,_complete_genome   1936  ........G..A........  1917
MH010202.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen76/CHN/2017,_complete_genome   1936  ........G..A........  1917


Lambda      K        H
    1.42    0.718     1.34 

Gapped
Lambda      K        H
    1.42    0.718     1.34 

Effective search space used: 808115


Query= CA16_421VP_BC2

Length=24
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

KY425529.1_Coxsackievirus_A16_strain_V1/YN/CHN/2015,_complete_genome  ...  42.4    2e-07
MN749141.1_Coxsackievirus_A16_strain_12C10,_complete_genome           42.4    2e-07
MH010201.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen289/CHN/2016,_complete_genome  ...  42.4    2e-07
MH010200.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen87/CHN/2016,_complete_genome  ...  42.4    2e-07
KY674980.1_Coxsackievirus_A16_strain_16E4-,_complete_genome           42.4    2e-07
MF189180.1_Coxsackievirus_A16_strain_USA/CT/2016-19518,_complete_genome  ...  42.4    2e-07
MH010206.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen220/CHN/2017,_complete_genome  ...  42.4    2e-07
MH010202.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen76/CHN/2017,_complete_genome  ...  40.3    8e-07
MH010204.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen174/CHN/2017,_complete_genome  ...  31.9    3e-04



Query_3                                                                            1     TTGGAAATATGYAGRGTGGAGACC  24
KY425529.1_Coxsackievirus_A16_strain_V1/YN/CHN/2015,_complete_genome               1844  ...........C..A.........  1867
MN749141.1_Coxsackievirus_A16_strain_12C10,_complete_genome                        1843  ...........C..G.........  1866
MH010201.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen289/CHN/2016,_complete_genome  1789  ...........T..A.........  1812
MH010200.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen87/CHN/2016,_complete_genome   1845  ...........T..A.........  1868
KY674980.1_Coxsackievirus_A16_strain_16E4-,_complete_genome                        1763  ...........C..G.........  1786
MF189180.1_Coxsackievirus_A16_strain_USA/CT/2016-19518,_complete_genome            1843  ...........C..G.........  1866
MH010206.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen220/CHN/2017,_complete_genome  1790  ...........C..A.........  1813
MH010202.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen76/CHN/2017,_complete_genome   1846   ..........T..G.........  1868
MH010204.1_Coxsackievirus_A16_isolate_CVA16/Shenzhen174/CHN/2017,_complete_genome  1800  ...........C..A..A.....   1822


Lambda      K        H
    1.45    0.723     1.37 

Gapped
Lambda      K        H
    1.45    0.723     1.37 

Effective search space used: 1101975


  Database: new_CA16_sequence.fasta
    Posted date:  Jun 9, 2020  4:38 PM
  Number of letters in database: 73,555
  Number of sequences in database:  10



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2

BLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: new_EV71_sequence.fasta
           10 sequences; 73,304 total letters



Query= EV71_VP1_S241-A

Length=20


***** No hits found *****



Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 732040


Query= EV71_VP1_S241

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

MK904809.1_Enterovirus_A71_isolate_87-2008_Xi'an_Shaanxi,_complete_genome  ...  40.1    6e-07
MG207963.1_Enterovirus_A71_strain_6-4/XY/CHN/2017,_complete_genome    40.1    6e-07
MG756691.1_Enterovirus_A71_strain_TW-50837-2016,_complete_genome      40.1    6e-07
MK791153.1_Enterovirus_A71_isolate_K17245,_complete_genome            40.1    6e-07
MK652139.1_Enterovirus_A71_strain_USA/2018-23092,_complete_genome     28.2    0.002



Query_2                                                                    1     GAGCGACGCCAGTAATCCCT  20
MK904809.1_Enterovirus_A71_isolate_87-2008_Xi'an_Shaanxi,_complete_genome  1629  ....................  1648
MG207963.1_Enterovirus_A71_strain_6-4/XY/CHN/2017,_complete_genome         1630  ....................  1649
MG756691.1_Enterovirus_A71_strain_TW-50837-2016,_complete_genome           1630  ....................  1649
MK791153.1_Enterovirus_A71_isolate_K17245,_complete_genome                 1629  ....................  1648
MK652139.1_Enterovirus_A71_strain_USA/2018-23092,_complete_genome          1613    ...........G......  1630


Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 732040


Query= EV71_VP1_A413

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

MK904809.1_Enterovirus_A71_isolate_87-2008_Xi'an_Shaanxi,_complete_genome  ...  37.4    5e-06
MG756691.1_Enterovirus_A71_strain_TW-50837-2016,_complete_genome      37.4    5e-06
MK652139.1_Enterovirus_A71_strain_USA/2018-23092,_complete_genome     37.4    5e-06
MG207963.1_Enterovirus_A71_strain_6-4/XY/CHN/2017,_complete_genome    29.2    0.001
MK791153.1_Enterovirus_A71_isolate_K17245,_complete_genome            29.2    0.001
MG976581.1_Enterovirus_A71_strain_USA/AK/2016-19516,_complete_genome  ...  27.1    0.005



Query_3                                                                    1     GGGGTGRAAGTTTGGTAGAA  20
MK904809.1_Enterovirus_A71_isolate_87-2008_Xi'an_Shaanxi,_complete_genome  1801  ......G.............  1782
MG756691.1_Enterovirus_A71_strain_TW-50837-2016,_complete_genome           1802  ......G.............  1783
MK652139.1_Enterovirus_A71_strain_USA/2018-23092,_complete_genome          1783  ......A.............  1764
MG207963.1_Enterovirus_A71_strain_6-4/XY/CHN/2017,_complete_genome         1798      ..G.............  1783
MK791153.1_Enterovirus_A71_isolate_K17245,_complete_genome                 1797      ..G.............  1782
MG976581.1_Enterovirus_A71_strain_USA/AK/2016-19516,_complete_genome       1779  ......G........       1765


Lambda      K        H
    1.42    0.718     1.34 

Gapped
Lambda      K        H
    1.42    0.718     1.34 

Effective search space used: 805354


Query= EV71_241VP_BC2

Length=24
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

MK904809.1_Enterovirus_A71_isolate_87-2008_Xi'an_Shaanxi,_complete_genome  ...  42.4    2e-07
MG756691.1_Enterovirus_A71_strain_TW-50837-2016,_complete_genome      42.4    2e-07
MK652139.1_Enterovirus_A71_strain_USA/2018-23092,_complete_genome     34.0    6e-05
MH718269.1_Enterovirus_A71_strain_USA/CO/2018-23026,_complete_genome  ...  31.9    3e-04
MK800119.1_Enterovirus_A71_strain_USA/2018-23124,_complete_genome     31.9    3e-04
MN515037.1_Enterovirus_A71_strain_16L,_complete_genome                31.9    3e-04
MT081373.1_Enterovirus_A71_strain_USA/2018-23296,_complete_genome     31.9    3e-04



Query_4                                                                    1     CCTGGCACAAAYCAATTYTTAACC  24
MK904809.1_Enterovirus_A71_isolate_87-2008_Xi'an_Shaanxi,_complete_genome  1733  ...........T.....T......  1756
MG756691.1_Enterovirus_A71_strain_TW-50837-2016,_complete_genome           1734  ...........C.....T......  1757
MK652139.1_Enterovirus_A71_strain_USA/2018-23092,_complete_genome          1715  ...........C.....T..      1734
MH718269.1_Enterovirus_A71_strain_USA/CO/2018-23026,_complete_genome       1177  ...........C.....         1193
MK800119.1_Enterovirus_A71_strain_USA/2018-23124,_complete_genome          1675  ...........C.....         1691
MN515037.1_Enterovirus_A71_strain_16L,_complete_genome                     1715  ...........C.....         1731
MT081373.1_Enterovirus_A71_strain_USA/2018-23296,_complete_genome          1738  ...........C.....         1754


Lambda      K        H
    1.45    0.723     1.37 

Gapped
Lambda      K        H
    1.45    0.723     1.37 

Effective search space used: 1098210


  Database: new_EV71_sequence.fasta
    Posted date:  Jun 9, 2020  4:38 PM
  Number of letters in database: 73,304
  Number of sequences in database:  10



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2

aBLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: new_H1N1_2009_sequence.fasta
           10 sequences; 17,280 total letters



Query= InfA_2009H1_S61

Length=21
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CY065904.1_Influenza_A_virus_(A/Netherlands/1083/2009(H1N1))_segment_4,_complete_sequence  ...  42.1    4e-08
CY066263.1_Influenza_A_virus_(A/California/VRDL111/2009(H1N1))_segment_4,_complete_sequence  ...  42.1    4e-08
CY052106.1_Influenza_A_virus_(A/Wisconsin/629-D00739/2009(H1N1))_segment_4,_complete_sequence  ...  42.1    4e-08
CY052322.1_Influenza_A_virus_(A/Texas/42202026/2009(H1N1))_segment_4,_complete_sequence  ...  42.1    4e-08
CY053135.1_Influenza_A_virus_(A/Houston/20H/2009(H1N1))_segment_4,_complete_sequence  ...  42.1    4e-08
CY053254.1_Influenza_A_virus_(A/Brownsville/36H/2009(H1N1))_segment_4,_complete_sequence  ...  42.1    4e-08
CY050887.1_Influenza_A_virus_(A/Mexico_City/018/2009(H1N1))_segment_4,_complete_sequence  ...  42.1    4e-08
AB572352.1_Influenza_A_virus_(A/Zambia/CZC1/2009(H1N1))_viral_cRNA,_segment_4,_complete_sequence  ...  42.1    4e-08
CY080344.1_Influenza_A_virus_(A/Cambodia/NHRCC00011/2009(H1N1))_segment_4,_complete_sequence  ...  42.1    4e-08



Query_1                                                                                           1    ATGATAATACCAGATCCAGCA  21
CY065904.1_Influenza_A_virus_(A/Netherlands/1083/2009(H1N1))_segment_4,_complete_sequence         864  .....................  844
CY066263.1_Influenza_A_virus_(A/California/VRDL111/2009(H1N1))_segment_4,_complete_sequence       864  .....................  844
CY052106.1_Influenza_A_virus_(A/Wisconsin/629-D00739/2009(H1N1))_segment_4,_complete_sequence     865  .....................  845
CY052322.1_Influenza_A_virus_(A/Texas/42202026/2009(H1N1))_segment_4,_complete_sequence           864  .....................  844
CY053135.1_Influenza_A_virus_(A/Houston/20H/2009(H1N1))_segment_4,_complete_sequence              864  .....................  844
CY053254.1_Influenza_A_virus_(A/Brownsville/36H/2009(H1N1))_segment_4,_complete_sequence          864  .....................  844
CY050887.1_Influenza_A_virus_(A/Mexico_City/018/2009(H1N1))_segment_4,_complete_sequence          864  .....................  844
AB572352.1_Influenza_A_virus_(A/Zambia/CZC1/2009(H1N1))_viral_cRNA,_segment_4,_complete_sequence  851  .....................  831
CY080344.1_Influenza_A_virus_(A/Cambodia/NHRCC00011/2009(H1N1))_segment_4,_complete_sequence      864  .....................  844


Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 206280


Query= InfA_2009H1_A234

Length=21
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CY065904.1_Influenza_A_virus_(A/Netherlands/1083/2009(H1N1))_segment_4,_complete_sequence  ...  42.1    4e-08
CY066263.1_Influenza_A_virus_(A/California/VRDL111/2009(H1N1))_segment_4,_complete_sequence  ...  42.1    4e-08
CY052106.1_Influenza_A_virus_(A/Wisconsin/629-D00739/2009(H1N1))_segment_4,_complete_sequence  ...  42.1    4e-08
CY052322.1_Influenza_A_virus_(A/Texas/42202026/2009(H1N1))_segment_4,_complete_sequence  ...  42.1    4e-08
CY053135.1_Influenza_A_virus_(A/Houston/20H/2009(H1N1))_segment_4,_complete_sequence  ...  42.1    4e-08
CY053254.1_Influenza_A_virus_(A/Brownsville/36H/2009(H1N1))_segment_4,_complete_sequence  ...  42.1    4e-08
CY050887.1_Influenza_A_virus_(A/Mexico_City/018/2009(H1N1))_segment_4,_complete_sequence  ...  42.1    4e-08
AB572352.1_Influenza_A_virus_(A/Zambia/CZC1/2009(H1N1))_viral_cRNA,_segment_4,_complete_sequence  ...  42.1    4e-08
CY080344.1_Influenza_A_virus_(A/Cambodia/NHRCC00011/2009(H1N1))_segment_4,_complete_sequence  ...  42.1    4e-08



Query_2                                                                                           1    GTTCAAGCCGGAAATAGCAAT  21
CY065904.1_Influenza_A_virus_(A/Netherlands/1083/2009(H1N1))_segment_4,_complete_sequence         691  .....................  711
CY066263.1_Influenza_A_virus_(A/California/VRDL111/2009(H1N1))_segment_4,_complete_sequence       691  .....................  711
CY052106.1_Influenza_A_virus_(A/Wisconsin/629-D00739/2009(H1N1))_segment_4,_complete_sequence     692  .....................  712
CY052322.1_Influenza_A_virus_(A/Texas/42202026/2009(H1N1))_segment_4,_complete_sequence           691  .....................  711
CY053135.1_Influenza_A_virus_(A/Houston/20H/2009(H1N1))_segment_4,_complete_sequence              691  .....................  711
CY053254.1_Influenza_A_virus_(A/Brownsville/36H/2009(H1N1))_segment_4,_complete_sequence          691  .....................  711
CY050887.1_Influenza_A_virus_(A/Mexico_City/018/2009(H1N1))_segment_4,_complete_sequence          691  .....................  711
AB572352.1_Influenza_A_virus_(A/Zambia/CZC1/2009(H1N1))_viral_cRNA,_segment_4,_complete_sequence  678  .....................  698
CY080344.1_Influenza_A_virus_(A/Cambodia/NHRCC00011/2009(H1N1))_segment_4,_complete_sequence      691  .....................  711


Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 206280


Query= IA2009_61H1_BC1

Length=28
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

CY065904.1_Influenza_A_virus_(A/Netherlands/1083/2009(H1N1))_segment_4,_complete_sequence  ...  56.0    5e-12
CY066263.1_Influenza_A_virus_(A/California/VRDL111/2009(H1N1))_segment_4,_complete_sequence  ...  56.0    5e-12
CY052106.1_Influenza_A_virus_(A/Wisconsin/629-D00739/2009(H1N1))_segment_4,_complete_sequence  ...  56.0    5e-12
CY052322.1_Influenza_A_virus_(A/Texas/42202026/2009(H1N1))_segment_4,_complete_sequence  ...  56.0    5e-12
CY053254.1_Influenza_A_virus_(A/Brownsville/36H/2009(H1N1))_segment_4,_complete_sequence  ...  56.0    5e-12
CY050887.1_Influenza_A_virus_(A/Mexico_City/018/2009(H1N1))_segment_4,_complete_sequence  ...  56.0    5e-12
AB572352.1_Influenza_A_virus_(A/Zambia/CZC1/2009(H1N1))_viral_cRNA,_segment_4,_complete_sequence  ...  56.0    5e-12
CY080344.1_Influenza_A_virus_(A/Cambodia/NHRCC00011/2009(H1N1))_segment_4,_complete_sequence  ...  56.0    5e-12
CY053135.1_Influenza_A_virus_(A/Houston/20H/2009(H1N1))_segment_4,_complete_sequence  ...  50.1    3e-10



Query_3                                                                                           1    AATGCATATCTCGGTACCACTAGATTTC  28
CY065904.1_Influenza_A_virus_(A/Netherlands/1083/2009(H1N1))_segment_4,_complete_sequence         828  ............................  801
CY066263.1_Influenza_A_virus_(A/California/VRDL111/2009(H1N1))_segment_4,_complete_sequence       828  ............................  801
CY052106.1_Influenza_A_virus_(A/Wisconsin/629-D00739/2009(H1N1))_segment_4,_complete_sequence     829  ............................  802
CY052322.1_Influenza_A_virus_(A/Texas/42202026/2009(H1N1))_segment_4,_complete_sequence           828  ............................  801
CY053254.1_Influenza_A_virus_(A/Brownsville/36H/2009(H1N1))_segment_4,_complete_sequence          828  ............................  801
CY050887.1_Influenza_A_virus_(A/Mexico_City/018/2009(H1N1))_segment_4,_complete_sequence          828  ............................  801
AB572352.1_Influenza_A_virus_(A/Zambia/CZC1/2009(H1N1))_viral_cRNA,_segment_4,_complete_sequence  815  ............................  788
CY080344.1_Influenza_A_virus_(A/Cambodia/NHRCC00011/2009(H1N1))_segment_4,_complete_sequence      828  ............................  801
CY053135.1_Influenza_A_virus_(A/Houston/20H/2009(H1N1))_segment_4,_complete_sequence              825     .........................  801


Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 326610


  Database: new_H1N1_2009_sequence.fasta
    Posted date:  Jun 9, 2020  4:38 PM
  Number of letters in database: 17,280
  Number of sequences in database:  10



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2

BLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: new_H1N1_2020_sequence.fasta
           10 sequences; 17,513 total letters



Query= InfA_H1_S701

Length=19


***** No hits found *****



Lambda      K        H
    1.42    0.718     1.35 

Gapped
Lambda      K        H
    1.42    0.718     1.35 

Effective search space used: 191763


Query= InfA_H1_A889

Length=19


***** No hits found *****



Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 191763


Query= InfA_701H1_BC2

Length=26
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

1740874|HA|A/Perth/40/2020|EPI_ISL_458151||A_/_H1N1                   29.0    6e-04
1740741|HA|A/Jamaica/1678/2020|EPI_ISL_455838||A_/_H1N1               29.0    6e-04
1739805|HA|A/Human/Moscow/121/2020|EPI_ISL_451931||A_/_H1N1           29.0    6e-04
1739757|HA|A/Human/Veliky_Novgorod/84/2020|EPI_ISL_451925||A_/_H1N1  ...  29.0    6e-04
1739292|HA|A/Hawaii/26/2020|EPI_ISL_449781||A_/_H1N1                  29.0    6e-04
1739214|HA|A/Washington/27/2020|EPI_ISL_449771||A_/_H1N1              29.0    6e-04
1739086|HA|A/Minnesota/22/2020|EPI_ISL_449755||A_/_H1N1               29.0    6e-04
1738508|HA|A/Romania/1200/2020|EPI_ISL_445197||A_/_H1N1               29.0    6e-04
1738131|HA|A/California/17/2020|EPI_ISL_443165||A_/_H1N1              29.0    6e-04



Query_3                                                              8    ACATACTTTGGACA  21
1740874|HA|A/Perth/40/2020|EPI_ISL_458151||A_/_H1N1                  971  ..............  958
1740741|HA|A/Jamaica/1678/2020|EPI_ISL_455838||A_/_H1N1              991  ..............  978
1739805|HA|A/Human/Moscow/121/2020|EPI_ISL_451931||A_/_H1N1          991  ..............  978
1739757|HA|A/Human/Veliky_Novgorod/84/2020|EPI_ISL_451925||A_/_H1N1  991  ..............  978
1739292|HA|A/Hawaii/26/2020|EPI_ISL_449781||A_/_H1N1                 991  ..............  978
1739214|HA|A/Washington/27/2020|EPI_ISL_449771||A_/_H1N1             991  ..............  978
1739086|HA|A/Minnesota/22/2020|EPI_ISL_449755||A_/_H1N1              991  ..............  978
1738508|HA|A/Romania/1200/2020|EPI_ISL_445197||A_/_H1N1              991  ..............  978
1738131|HA|A/California/17/2020|EPI_ISL_443165||A_/_H1N1             991  ..............  978


Lambda      K        H
    1.41    0.716     1.34 

Gapped
Lambda      K        H
    1.41    0.716     1.34 

Effective search space used: 296191


  Database: new_H1N1_2020_sequence.fasta
    Posted date:  Jun 9, 2020  4:38 PM
  Number of letters in database: 17,513
  Number of sequences in database:  10



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2

BLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: new_H3N2_gisaid_epiflu_sequence.fasta
           10 sequences; 17,150 total letters



Query= InfA_H3_S1353

Length=19
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

1740570|HA|A/Louisiana/15/2020|EPI_ISL_455810||A_/_H3N2               38.2    6e-07
1738944|HA|A/California/52/2020|EPI_ISL_449737||A_/_H3N2              38.2    6e-07
1738616|HA|A/Romania/1012/2020|EPI_ISL_445201||A_/_H3N2               38.2    6e-07
1735618|HA|A/Italy/11872/2020|EPI_ISL_435195||A_/_H3N2                38.2    6e-07
1735586|HA|A/Germany/11868/2020|EPI_ISL_435191||A_/_H3N2              38.2    6e-07
1735383|HA|A/Slovenia/944/2020|EPI_ISL_434443||A_/_H3N2               38.2    6e-07
1735312|HA|A/Bulgaria/989/2020|EPI_ISL_434407||A_/_H3N2               38.2    6e-07
1733849|HA|A/Sydney/2/2020|EPI_ISL_429113||A_/_H3N2                   38.2    6e-07
1730200|HA|A/Spain/11642/2020|EPI_ISL_427996||A_/_H3N2                38.2    6e-07
1730165|HA|A/South_Korea/11637/2020|EPI_ISL_427991||A_/_H3N2          38.2    6e-07



Query_1                                                       1    CATAAGGGTAACAGTTGCT  19
1740570|HA|A/Louisiana/15/2020|EPI_ISL_455810||A_/_H3N2       366  ...................  348
1738944|HA|A/California/52/2020|EPI_ISL_449737||A_/_H3N2      366  ...................  348
1738616|HA|A/Romania/1012/2020|EPI_ISL_445201||A_/_H3N2       366  ...................  348
1735618|HA|A/Italy/11872/2020|EPI_ISL_435195||A_/_H3N2        349  ...................  331
1735586|HA|A/Germany/11868/2020|EPI_ISL_435191||A_/_H3N2      349  ...................  331
1735383|HA|A/Slovenia/944/2020|EPI_ISL_434443||A_/_H3N2       349  ...................  331
1735312|HA|A/Bulgaria/989/2020|EPI_ISL_434407||A_/_H3N2       349  ...................  331
1733849|HA|A/Sydney/2/2020|EPI_ISL_429113||A_/_H3N2           349  ...................  331
1730200|HA|A/Spain/11642/2020|EPI_ISL_427996||A_/_H3N2        349  ...................  331
1730165|HA|A/South_Korea/11637/2020|EPI_ISL_427991||A_/_H3N2  349  ...................  331


Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 187770


Query= InfA_H3_A1541

Length=19
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

1740570|HA|A/Louisiana/15/2020|EPI_ISL_455810||A_/_H3N2               38.2    6e-07
1738616|HA|A/Romania/1012/2020|EPI_ISL_445201||A_/_H3N2               38.2    6e-07
1735586|HA|A/Germany/11868/2020|EPI_ISL_435191||A_/_H3N2              38.2    6e-07
1733849|HA|A/Sydney/2/2020|EPI_ISL_429113||A_/_H3N2                   38.2    6e-07
1738944|HA|A/California/52/2020|EPI_ISL_449737||A_/_H3N2              30.2    1e-04
1735383|HA|A/Slovenia/944/2020|EPI_ISL_434443||A_/_H3N2               30.2    1e-04
1735312|HA|A/Bulgaria/989/2020|EPI_ISL_434407||A_/_H3N2               30.2    1e-04
1730200|HA|A/Spain/11642/2020|EPI_ISL_427996||A_/_H3N2                30.2    1e-04
1730165|HA|A/South_Korea/11637/2020|EPI_ISL_427991||A_/_H3N2          30.2    1e-04



Query_2                                                       1    ATGCTACTGAGCTGGTTCA  19
1740570|HA|A/Louisiana/15/2020|EPI_ISL_455810||A_/_H3N2       178  ...................  196
1738616|HA|A/Romania/1012/2020|EPI_ISL_445201||A_/_H3N2       178  ...................  196
1735586|HA|A/Germany/11868/2020|EPI_ISL_435191||A_/_H3N2      161  ...................  179
1733849|HA|A/Sydney/2/2020|EPI_ISL_429113||A_/_H3N2           161  ...................  179
1738944|HA|A/California/52/2020|EPI_ISL_449737||A_/_H3N2      178  ...........T.......  196
1735383|HA|A/Slovenia/944/2020|EPI_ISL_434443||A_/_H3N2       161  ...........T.......  179
1735312|HA|A/Bulgaria/989/2020|EPI_ISL_434407||A_/_H3N2       161  ...........T.......  179
1730200|HA|A/Spain/11642/2020|EPI_ISL_427996||A_/_H3N2        161  ...........T.......  179
1730165|HA|A/South_Korea/11637/2020|EPI_ISL_427991||A_/_H3N2  161  ...........T.......  179


Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 187770


Query= IAH3_1353L_BC1

Length=24
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

1740570|HA|A/Louisiana/15/2020|EPI_ISL_455810||A_/_H3N2               46.1    3e-09
1738616|HA|A/Romania/1012/2020|EPI_ISL_445201||A_/_H3N2               46.1    3e-09
1735618|HA|A/Italy/11872/2020|EPI_ISL_435195||A_/_H3N2                46.1    3e-09
1735586|HA|A/Germany/11868/2020|EPI_ISL_435191||A_/_H3N2              46.1    3e-09
1735383|HA|A/Slovenia/944/2020|EPI_ISL_434443||A_/_H3N2               46.1    3e-09
1733849|HA|A/Sydney/2/2020|EPI_ISL_429113||A_/_H3N2                   46.1    3e-09
1738944|HA|A/California/52/2020|EPI_ISL_449737||A_/_H3N2              38.2    8e-07
1735312|HA|A/Bulgaria/989/2020|EPI_ISL_434407||A_/_H3N2               38.2    8e-07
1730200|HA|A/Spain/11642/2020|EPI_ISL_427996||A_/_H3N2                38.2    8e-07
1730165|HA|A/South_Korea/11637/2020|EPI_ISL_427991||A_/_H3N2          38.2    8e-07



Query_3                                                       2    TGAGGGTCTCCCAATAGAGCATC  24
1740570|HA|A/Louisiana/15/2020|EPI_ISL_455810||A_/_H3N2       289  .......................  267
1738616|HA|A/Romania/1012/2020|EPI_ISL_445201||A_/_H3N2       289  .......................  267
1735618|HA|A/Italy/11872/2020|EPI_ISL_435195||A_/_H3N2        272  .......................  250
1735586|HA|A/Germany/11868/2020|EPI_ISL_435191||A_/_H3N2      272  .......................  250
1735383|HA|A/Slovenia/944/2020|EPI_ISL_434443||A_/_H3N2       272  .......................  250
1733849|HA|A/Sydney/2/2020|EPI_ISL_429113||A_/_H3N2           272  .......................  250
1738944|HA|A/California/52/2020|EPI_ISL_449737||A_/_H3N2      289  ........C..............  267
1735312|HA|A/Bulgaria/989/2020|EPI_ISL_434407||A_/_H3N2       272  ........C..............  250
1730200|HA|A/Spain/11642/2020|EPI_ISL_427996||A_/_H3N2        272  ........C..............  250
1730165|HA|A/South_Korea/11637/2020|EPI_ISL_427991||A_/_H3N2  272  ........C..............  250


Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 255900


  Database: new_H3N2_gisaid_epiflu_sequence.fasta
    Posted date:  Jun 9, 2020  4:38 PM
  Number of letters in database: 17,150
  Number of sequences in database:  10



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2

BLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: new_H7N9_gisaid_epiflu_sequence.fasta
           10 sequences; 17,043 total letters



Query= InfA_H7_S171

Length=21
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

1295344|HA|A/Xinjiang/04062/2018|EPI_ISL_325939||A_/_H7N9             42.1    4e-08
1551292|HA|A/Changsha/72/2017|EPI_ISL_378706|MG572489|A_/_H7N9        42.1    4e-08
1431608|HA|A/Gansu/23275/2019|EPI_ISL_353999||A_/_H7N9                42.1    4e-08
1360558|HA|A/Yunnan/wenshan01/2017|EPI_ISL_339477||A_/_H7N9           42.1    4e-08
1302537|HA|A/Guangdong/GZ8H001/2017|EPI_ISL_327792|MF455308|A_/_H7N9  ...  42.1    4e-08
1145176|HA|A/Ordos,_Inner_Mongolia/0526/2017|EPI_ISL_292347||A_/_H7N9  ...  42.1    4e-08
979597|HA|A/Shenzhen/Th0007/2017|EPI_ISL_259757||A_/_H7N9             42.1    4e-08
971292|HA|A/Henan/11156/2017|EPI_ISL_258007||A_/_H7N9                 42.1    4e-08
971196|HA|A/Jiangsu/11590/2017|EPI_ISL_257995||A_/_H7N9               42.1    4e-08
971124|HA|A/Sichuan/12218/2017|EPI_ISL_257986||A_/_H7N9               42.1    4e-08



Query_1                                                                1     GGGTCAATCTGTATTCTATTT  21
1295344|HA|A/Xinjiang/04062/2018|EPI_ISL_325939||A_/_H7N9              1541  .....................  1521
1551292|HA|A/Changsha/72/2017|EPI_ISL_378706|MG572489|A_/_H7N9         1541  .....................  1521
1431608|HA|A/Gansu/23275/2019|EPI_ISL_353999||A_/_H7N9                 1553  .....................  1533
1360558|HA|A/Yunnan/wenshan01/2017|EPI_ISL_339477||A_/_H7N9            1562  .....................  1542
1302537|HA|A/Guangdong/GZ8H001/2017|EPI_ISL_327792|MF455308|A_/_H7N9   1574  .....................  1554
1145176|HA|A/Ordos,_Inner_Mongolia/0526/2017|EPI_ISL_292347||A_/_H7N9  1553  .....................  1533
979597|HA|A/Shenzhen/Th0007/2017|EPI_ISL_259757||A_/_H7N9              1574  .....................  1554
971292|HA|A/Henan/11156/2017|EPI_ISL_258007||A_/_H7N9                  1541  .....................  1521
971196|HA|A/Jiangsu/11590/2017|EPI_ISL_257995||A_/_H7N9                1541  .....................  1521
971124|HA|A/Sichuan/12218/2017|EPI_ISL_257986||A_/_H7N9                1541  .....................  1521


Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 203436


Query= InfA_H7_A309

Length=21
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

979597|HA|A/Shenzhen/Th0007/2017|EPI_ISL_259757||A_/_H7N9             38.2    7e-07
1295344|HA|A/Xinjiang/04062/2018|EPI_ISL_325939||A_/_H7N9             34.2    1e-05
1551292|HA|A/Changsha/72/2017|EPI_ISL_378706|MG572489|A_/_H7N9        34.2    1e-05
1360558|HA|A/Yunnan/wenshan01/2017|EPI_ISL_339477||A_/_H7N9           34.2    1e-05
971292|HA|A/Henan/11156/2017|EPI_ISL_258007||A_/_H7N9                 34.2    1e-05
971196|HA|A/Jiangsu/11590/2017|EPI_ISL_257995||A_/_H7N9               34.2    1e-05
971124|HA|A/Sichuan/12218/2017|EPI_ISL_257986||A_/_H7N9               34.2    1e-05
1431608|HA|A/Gansu/23275/2019|EPI_ISL_353999||A_/_H7N9                30.2    2e-04
1302537|HA|A/Guangdong/GZ8H001/2017|EPI_ISL_327792|MF455308|A_/_H7N9  ...  30.2    2e-04
1145176|HA|A/Ordos,_Inner_Mongolia/0526/2017|EPI_ISL_292347||A_/_H7N9  ...  30.2    2e-04



Query_2                                                                1     ATGCTGAAGAAGATGGCACTG  21
979597|HA|A/Shenzhen/Th0007/2017|EPI_ISL_259757||A_/_H7N9              1436  ...................    1454
1295344|HA|A/Xinjiang/04062/2018|EPI_ISL_325939||A_/_H7N9              1403  ..........G..........  1423
1551292|HA|A/Changsha/72/2017|EPI_ISL_378706|MG572489|A_/_H7N9         1403  ..........G..........  1423
1360558|HA|A/Yunnan/wenshan01/2017|EPI_ISL_339477||A_/_H7N9            1424  ..........G..........  1444
971292|HA|A/Henan/11156/2017|EPI_ISL_258007||A_/_H7N9                  1403  ..........G..........  1423
971196|HA|A/Jiangsu/11590/2017|EPI_ISL_257995||A_/_H7N9                1403  ..........G..........  1423
971124|HA|A/Sichuan/12218/2017|EPI_ISL_257986||A_/_H7N9                1403  ..........G..........  1423
1431608|HA|A/Gansu/23275/2019|EPI_ISL_353999||A_/_H7N9                 1415  .............C.....    1433
1302537|HA|A/Guangdong/GZ8H001/2017|EPI_ISL_327792|MF455308|A_/_H7N9   1436  .............C.....    1454
1145176|HA|A/Ordos,_Inner_Mongolia/0526/2017|EPI_ISL_292347||A_/_H7N9  1415  .............C.....    1433


Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 203436


Query= InfA_141H7_BC1

Length=26
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

1295344|HA|A/Xinjiang/04062/2018|EPI_ISL_325939||A_/_H7N9             38.1    1e-06
1360558|HA|A/Yunnan/wenshan01/2017|EPI_ISL_339477||A_/_H7N9           38.1    1e-06
971292|HA|A/Henan/11156/2017|EPI_ISL_258007||A_/_H7N9                 38.1    1e-06
971196|HA|A/Jiangsu/11590/2017|EPI_ISL_257995||A_/_H7N9               38.1    1e-06
971124|HA|A/Sichuan/12218/2017|EPI_ISL_257986||A_/_H7N9               38.1    1e-06
1551292|HA|A/Changsha/72/2017|EPI_ISL_378706|MG572489|A_/_H7N9        29.7    3e-04



Query_3                                                         1     TTGCYTCTTCCCTGTAYTTGCTGTGA  26
1295344|HA|A/Xinjiang/04062/2018|EPI_ISL_325939||A_/_H7N9       1516  ....C...........T..T......  1491
1360558|HA|A/Yunnan/wenshan01/2017|EPI_ISL_339477||A_/_H7N9     1537  ....C...........T..T......  1512
971292|HA|A/Henan/11156/2017|EPI_ISL_258007||A_/_H7N9           1516  ....C...........T..T......  1491
971196|HA|A/Jiangsu/11590/2017|EPI_ISL_257995||A_/_H7N9         1516  ....C...........T..T......  1491
971124|HA|A/Sichuan/12218/2017|EPI_ISL_257986||A_/_H7N9         1516  ....C...........T..T......  1491
1551292|HA|A/Changsha/72/2017|EPI_ISL_378706|MG572489|A_/_H7N9  1516  ....C........A..T..T......  1491


Lambda      K        H
    1.45    0.722     1.37 

Gapped
Lambda      K        H
    1.45    0.722     1.37 

Effective search space used: 305334


  Database: new_H7N9_gisaid_epiflu_sequence.fasta
    Posted date:  Jun 9, 2020  4:38 PM
  Number of letters in database: 17,043
  Number of sequences in database:  10



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2

BLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: new_HMPV_sequence.fasta
           10 sequences; 133,259 total letters



Query= HMPV_FP_S789

Length=19
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

MN745084.1_Human_metapneumovirus_isolate_bj0043,_complete_genome      32.5    2e-04
KY474529.1_Human_metapneumovirus_isolate_hMPV/USA/AR001/2016,_complete_genome  ...  32.5    2e-04
MH150888.1_Human_metapneumovirus_isolate_NL/00/17_type_A2_v40,_complete_genome  ...  32.5    2e-04
MK167039.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC2938/2017,_complete_genome  ...  32.5    2e-04
MK087726.1_Human_metapneumovirus_isolate_hMPV/CHN/18JB00311/2018,_complete_genome  ...  32.5    2e-04
MK820375.1_Human_metapneumovirus_isolate_bj0123,_complete_genome      32.5    2e-04
MN745087.1_Human_metapneumovirus_isolate_bj1203,_complete_genome      32.5    2e-04
MN306028.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0380/2019,_complete_genome  ...  32.5    2e-04
MN306024.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0324/2019,_complete_genome  ...  32.5    2e-04
MN306019.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0211/2018,_complete_genome  ...  32.5    2e-04



Query_1                                                                                2     CCTGCAGATGTHGGCATG  19
MN745084.1_Human_metapneumovirus_isolate_bj0043,_complete_genome                       3770  ...........C......  3753
KY474529.1_Human_metapneumovirus_isolate_hMPV/USA/AR001/2016,_complete_genome          3773  ...........C......  3756
MH150888.1_Human_metapneumovirus_isolate_NL/00/17_type_A2_v40,_complete_genome         3781  ...........C......  3764
MK167039.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC2938/2017,_complete_genome  3752  ...........T......  3735
MK087726.1_Human_metapneumovirus_isolate_hMPV/CHN/18JB00311/2018,_complete_genome      3774  ...........C......  3757
MK820375.1_Human_metapneumovirus_isolate_bj0123,_complete_genome                       3767  ...........T......  3750
MN745087.1_Human_metapneumovirus_isolate_bj1203,_complete_genome                       3770  ...........C......  3753
MN306028.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0380/2019,_complete_genome  3753  ...........C......  3736
MN306024.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0324/2019,_complete_genome  3774  ...........C......  3757
MN306019.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0211/2018,_complete_genome  3749  ...........T......  3732


Lambda      K        H
    1.48    0.733     1.40 

Gapped
Lambda      K        H
    1.48    0.733     1.40 

Effective search space used: 1331690


Query= HMPV_FP_A929

Length=19
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

MN745084.1_Human_metapneumovirus_isolate_bj0043,_complete_genome      35.4    3e-05
KY474529.1_Human_metapneumovirus_isolate_hMPV/USA/AR001/2016,_complete_genome  ...  35.4    3e-05
MH150888.1_Human_metapneumovirus_isolate_NL/00/17_type_A2_v40,_complete_genome  ...  35.4    3e-05
MK167039.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC2938/2017,_complete_genome  ...  35.4    3e-05
MK087726.1_Human_metapneumovirus_isolate_hMPV/CHN/18JB00311/2018,_complete_genome  ...  35.4    3e-05
MK820375.1_Human_metapneumovirus_isolate_bj0123,_complete_genome      35.4    3e-05
MN745087.1_Human_metapneumovirus_isolate_bj1203,_complete_genome      35.4    3e-05
MN306028.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0380/2019,_complete_genome  ...  35.4    3e-05
MN306024.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0324/2019,_complete_genome  ...  35.4    3e-05
MN306019.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0211/2018,_complete_genome  ...  35.4    3e-05



Query_2                                                                                1     TTCAGTCARTTCAACAGAA  19
MN745084.1_Human_metapneumovirus_isolate_bj0043,_complete_genome                       3631  ........A..........  3649
KY474529.1_Human_metapneumovirus_isolate_hMPV/USA/AR001/2016,_complete_genome          3634  ........A..........  3652
MH150888.1_Human_metapneumovirus_isolate_NL/00/17_type_A2_v40,_complete_genome         3642  ........A..........  3660
MK167039.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC2938/2017,_complete_genome  3613  ........A..........  3631
MK087726.1_Human_metapneumovirus_isolate_hMPV/CHN/18JB00311/2018,_complete_genome      3635  ........A..........  3653
MK820375.1_Human_metapneumovirus_isolate_bj0123,_complete_genome                       3628  ........A..........  3646
MN745087.1_Human_metapneumovirus_isolate_bj1203,_complete_genome                       3631  ........A..........  3649
MN306028.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0380/2019,_complete_genome  3614  ........A..........  3632
MN306024.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0324/2019,_complete_genome  3635  ........A..........  3653
MN306019.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0211/2018,_complete_genome  3610  ........A..........  3628


Lambda      K        H
    1.42    0.718     1.35 

Gapped
Lambda      K        H
    1.42    0.718     1.35 

Effective search space used: 1198431


Query= HMPV_789FP_BC2

Length=26
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

MN745084.1_Human_metapneumovirus_isolate_bj0043,_complete_genome      47.3    1e-08
KY474529.1_Human_metapneumovirus_isolate_hMPV/USA/AR001/2016,_complete_genome  ...  47.3    1e-08
MH150888.1_Human_metapneumovirus_isolate_NL/00/17_type_A2_v40,_complete_genome  ...  47.3    1e-08
MK167039.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC2938/2017,_complete_genome  ...  47.3    1e-08
MK087726.1_Human_metapneumovirus_isolate_hMPV/CHN/18JB00311/2018,_complete_genome  ...  47.3    1e-08
MN745087.1_Human_metapneumovirus_isolate_bj1203,_complete_genome      47.3    1e-08
MN306028.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0380/2019,_complete_genome  ...  47.3    1e-08
MN306024.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0324/2019,_complete_genome  ...  47.3    1e-08
MK820375.1_Human_metapneumovirus_isolate_bj0123,_complete_genome      43.2    2e-07
MN306019.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0211/2018,_complete_genome  ...  39.1    4e-06



Query_3                                                                                2     CATTGTCTGAAAAYTGCCGCACAAC  26
MN745084.1_Human_metapneumovirus_isolate_bj0043,_complete_genome                       3685  .............T...........  3661
KY474529.1_Human_metapneumovirus_isolate_hMPV/USA/AR001/2016,_complete_genome          3688  .............T...........  3664
MH150888.1_Human_metapneumovirus_isolate_NL/00/17_type_A2_v40,_complete_genome         3696  .............T...........  3672
MK167039.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC2938/2017,_complete_genome  3667  .............T...........  3643
MK087726.1_Human_metapneumovirus_isolate_hMPV/CHN/18JB00311/2018,_complete_genome      3689  .............T...........  3665
MN745087.1_Human_metapneumovirus_isolate_bj1203,_complete_genome                       3685  .............T...........  3661
MN306028.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0380/2019,_complete_genome  3668  .............T...........  3644
MN306024.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0324/2019,_complete_genome  3689  .............T...........  3665
MK820375.1_Human_metapneumovirus_isolate_bj0123,_complete_genome                       3682  ............RC...........  3658
MN306019.1_Human_metapneumovirus_strain_HMPV/Seattle/USA/SC0211/2018,_complete_genome  3664  ....A........C...........  3640


Lambda      K        H
    1.41    0.716     1.34 

Gapped
Lambda      K        H
    1.41    0.716     1.34 

Effective search space used: 2130544


  Database: new_HMPV_sequence.fasta
    Posted date:  Jun 9, 2020  4:38 PM
  Number of letters in database: 133,259
  Number of sequences in database:  10



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2

BLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: new_HRV_sequence.fasta
           10 sequences; 70,483 total letters



Query= HRV_UTAC_S464

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

KY342346.1_Human_rhinovirus_A22_strain_HRV-A22/Lancaster/2015,_complete_genome  ...  37.4    4e-06
KY967355.1_Rhinovirus_A_strain_10G7,_complete_sequence                37.4    4e-06
MN749154.1_Human_rhinovirus_A2_strain_12M7,_complete_genome           37.4    4e-06
MN749148.1_Human_rhinovirus_A51_strain_12K5,_complete_genome          37.4    4e-06
LC530048.1_Human_rhinovirus_A49_sugckmmaht_NGO1_genomic_RNA,_complete_genome  ...  37.4    4e-06
MH899591.1_Rhinovirus_A_isolate_HRV_A_SK001,_complete_genome          37.4    4e-06
KY189313.1_Human_rhinovirus_A61_strain_SCH-99_polyprotein_gene,_complete_cds  ...  29.2    0.001
MN369045.1_Human_rhinovirus_A53_strain_SC9746,_complete_genome        29.2    0.001



Query_1                                                                         3    GACAAGGTGTGAAGAGCC  20
KY342346.1_Human_rhinovirus_A22_strain_HRV-A22/Lancaster/2015,_complete_genome  401  ..................  418
KY967355.1_Rhinovirus_A_strain_10G7,_complete_sequence                          346  ..................  363
MN749154.1_Human_rhinovirus_A2_strain_12M7,_complete_genome                     366  ..................  383
MN749148.1_Human_rhinovirus_A51_strain_12K5,_complete_genome                    394  ..................  411
LC530048.1_Human_rhinovirus_A49_sugckmmaht_NGO1_genomic_RNA,_complete_genome    359  ..................  376
MH899591.1_Rhinovirus_A_isolate_HRV_A_SK001,_complete_genome                    279  ..................  296
KY189313.1_Human_rhinovirus_A61_strain_SCH-99_polyprotein_gene,_complete_cds    405  .........C........  422
MN369045.1_Human_rhinovirus_A53_strain_SC9746,_complete_genome                  276  ....G.............  293


Lambda      K        H
    1.42    0.718     1.34 

Gapped
Lambda      K        H
    1.42    0.718     1.34 

Effective search space used: 774323


Query= HRV_UT_A590

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

KY342346.1_Human_rhinovirus_A22_strain_HRV-A22/Lancaster/2015,_complete_genome  ...  40.1    6e-07
KY189313.1_Human_rhinovirus_A61_strain_SCH-99_polyprotein_gene,_complete_cds  ...  40.1    6e-07
KY967355.1_Rhinovirus_A_strain_10G7,_complete_sequence                40.1    6e-07
MF973194.1_Human_rhinovirus_A1_strain_7A2,_complete_genome            40.1    6e-07
MN369045.1_Human_rhinovirus_A53_strain_SC9746,_complete_genome        40.1    6e-07
MN749154.1_Human_rhinovirus_A2_strain_12M7,_complete_genome           40.1    6e-07
MN749148.1_Human_rhinovirus_A51_strain_12K5,_complete_genome          40.1    6e-07
MN749144.1_Human_rhinovirus_A45_strain_12I7,_complete_genome          40.1    6e-07
LC530048.1_Human_rhinovirus_A49_sugckmmaht_NGO1_genomic_RNA,_complete_genome  ...  40.1    6e-07
MH899591.1_Rhinovirus_A_isolate_HRV_A_SK001,_complete_genome          40.1    6e-07



Query_2                                                                         1    AAACACGGACACCCAAAGTA  20
KY342346.1_Human_rhinovirus_A22_strain_HRV-A22/Lancaster/2015,_complete_genome  555  ....................  536
KY189313.1_Human_rhinovirus_A61_strain_SCH-99_polyprotein_gene,_complete_cds    559  ....................  540
KY967355.1_Rhinovirus_A_strain_10G7,_complete_sequence                          500  ....................  481
MF973194.1_Human_rhinovirus_A1_strain_7A2,_complete_genome                      384  ....................  365
MN369045.1_Human_rhinovirus_A53_strain_SC9746,_complete_genome                  430  ....................  411
MN749154.1_Human_rhinovirus_A2_strain_12M7,_complete_genome                     520  ....................  501
MN749148.1_Human_rhinovirus_A51_strain_12K5,_complete_genome                    547  ....................  528
MN749144.1_Human_rhinovirus_A45_strain_12I7,_complete_genome                    558  ....................  539
LC530048.1_Human_rhinovirus_A49_sugckmmaht_NGO1_genomic_RNA,_complete_genome    513  ....................  494
MH899591.1_Rhinovirus_A_isolate_HRV_A_SK001,_complete_genome                    433  ....................  414


Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 703830


Query= HRV_UT_BC1

Length=25
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

KY342346.1_Human_rhinovirus_A22_strain_HRV-A22/Lancaster/2015,_complete_genome  ...  47.3    6e-09
KY189313.1_Human_rhinovirus_A61_strain_SCH-99_polyprotein_gene,_complete_cds  ...  47.3    6e-09
KY967355.1_Rhinovirus_A_strain_10G7,_complete_sequence                47.3    6e-09
MF973194.1_Human_rhinovirus_A1_strain_7A2,_complete_genome            47.3    6e-09
MN369045.1_Human_rhinovirus_A53_strain_SC9746,_complete_genome        47.3    6e-09
MN749154.1_Human_rhinovirus_A2_strain_12M7,_complete_genome           47.3    6e-09
LC530048.1_Human_rhinovirus_A49_sugckmmaht_NGO1_genomic_RNA,_complete_genome  ...  47.3    6e-09
MH899591.1_Rhinovirus_A_isolate_HRV_A_SK001,_complete_genome          47.3    6e-09
MN749148.1_Human_rhinovirus_A51_strain_12K5,_complete_genome          45.3    2e-08
MN749144.1_Human_rhinovirus_A45_strain_12I7,_complete_genome          45.3    2e-08



Query_3                                                                         1    GTCCTCCGGCCCCTGAATGYGGCTA  25
KY342346.1_Human_rhinovirus_A22_strain_HRV-A22/Lancaster/2015,_complete_genome  436  ...................C.....  460
KY189313.1_Human_rhinovirus_A61_strain_SCH-99_polyprotein_gene,_complete_cds    440  ...................C.....  464
KY967355.1_Rhinovirus_A_strain_10G7,_complete_sequence                          381  ...................C.....  405
MF973194.1_Human_rhinovirus_A1_strain_7A2,_complete_genome                      265  ...................C.....  289
MN369045.1_Human_rhinovirus_A53_strain_SC9746,_complete_genome                  311  ...................T.....  335
MN749154.1_Human_rhinovirus_A2_strain_12M7,_complete_genome                     401  ...................T.....  425
LC530048.1_Human_rhinovirus_A49_sugckmmaht_NGO1_genomic_RNA,_complete_genome    394  ...................C.....  418
MH899591.1_Rhinovirus_A_isolate_HRV_A_SK001,_complete_genome                    314  ...................T.....  338
MN749148.1_Human_rhinovirus_A51_strain_12K5,_complete_genome                    430   ..................C.....  453
MN749144.1_Human_rhinovirus_A45_strain_12I7,_complete_genome                    440   ..................T.....  463


Lambda      K        H
    1.41    0.716     1.34 

Gapped
Lambda      K        H
    1.41    0.716     1.34 

Effective search space used: 1055745


  Database: new_HRV_sequence.fasta
    Posted date:  Jun 9, 2020  4:38 PM
  Number of letters in database: 70,483
  Number of sequences in database:  10



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2

BLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: new_H7N9_gisaid_epiflu_sequence.fasta
           10 sequences; 17,043 total letters



Query= InfA_MP_S778-4

Length=22


***** No hits found *****



Lambda      K        H
    1.42    0.723     1.35 

Gapped
Lambda      K        H
    1.42    0.723     1.35 

Effective search space used: 237482


Query= InfA_MP_A979

Length=20


***** No hits found *****



Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 186483


Query= InfA-778MP-BC1

Length=24


***** No hits found *****



Lambda      K        H
    1.41    0.717     1.34 

Gapped
Lambda      K        H
    1.41    0.717     1.34 

Effective search space used: 254295


  Database: new_H7N9_gisaid_epiflu_sequence.fasta
    Posted date:  Jun 9, 2020  4:38 PM
  Number of letters in database: 17,043
  Number of sequences in database:  10



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2

BLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: new_InfluenzaB_gisaid_epiflu_sequence.fasta
           10 sequences; 17,912 total letters



Query= InfB_MP_S21

Length=20


***** No hits found *****



Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 196042


Query= InfB_MP_A189

Length=20


***** No hits found *****



Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 196042


Query= InfB_21MP_BC1

Length=26


***** No hits found *****



Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 302974


  Database: new_InfluenzaB_gisaid_epiflu_sequence.fasta
    Posted date:  Jun 9, 2020  4:38 PM
  Number of letters in database: 17,912
  Number of sequences in database:  10



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2

BLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: new_OC43_HKU1.fasta
           20 sequences; 605,358 total letters



Query= Corn_OC_S221

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

KF430201.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-18/2010,_complete_genome  ...  34.4    3e-04
KF686346.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-12/2010,_complete_genome  ...  34.4    3e-04
KF686343.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-13/2010,_complete_genome  ...  34.4    3e-04
KF686341.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-10/2010,_complete_genome  ...  34.4    3e-04
KY674942.1_Human_coronavirus_HKU1_strain_N09-1627B,_complete_genome  ...  34.4    3e-04
KY674941.1_Human_coronavirus_HKU1_strain_N09-1663B,_complete_genome  ...  34.4    3e-04
KY674921.1_Human_coronavirus_HKU1_genotype_B_strain_N08-87,_complete_genome  ...  34.4    3e-04
MH940245.1_Human_coronavirus_HKU1_isolate_SI17244,_complete_genome    34.4    3e-04
MK167038.1_Human_coronavirus_HKU1_strain_SC2521,_complete_genome      34.4    3e-04
KY674943.1_Human_coronavirus_HKU1_strain_N09-1605B,_complete_genome  ...  34.4    3e-04
MN306043.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0841/2019,_complete_genome  ...  34.4    3e-04
NC_006213.1_Human_coronavirus_OC43_strain_ATCC_VR-759,_complete_genome  ...  34.4    3e-04
MG197709.1_Human_coronavirus_OC43_strain_BJ-112,_complete_genome      34.4    3e-04
MK303619.1_Human_coronavirus_OC43_isolate_MDS6,_complete_genome       34.4    3e-04
MN026164.1_Human_coronavirus_OC43_isolate_OC43_KLF_01_2018,_complete_genome  ...  34.4    3e-04
MN310476.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC9428/2018,_complete_genome  ...  34.4    3e-04
MN310478.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0776/2019,_complete_genome  ...  34.4    3e-04
MN306053.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC9430/2018,_complete_genome  ...  34.4    3e-04
MN306041.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0810/2019,_complete_genome  ...  34.4    3e-04
MN306036.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0682/2019,_complete_genome  ...  34.4    3e-04



Query_1                                                                                      1      TGGAARCCTGGYTATTCTAT  20
KF430201.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-18/2010,_complete_genome        20901  .....A.....C........  20920
KF686346.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-12/2010,_complete_genome        20946  .....A.....C........  20965
KF686343.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-13/2010,_complete_genome        20946  .....A.....C........  20965
KF686341.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-10/2010,_complete_genome        20796  .....A.....C........  20815
KY674942.1_Human_coronavirus_HKU1_strain_N09-1627B,_complete_genome                          20848  .....A.....C........  20867
KY674941.1_Human_coronavirus_HKU1_strain_N09-1663B,_complete_genome                          20416  .....A.....C........  20435
KY674921.1_Human_coronavirus_HKU1_genotype_B_strain_N08-87,_complete_genome                  20840  .....A.....T........  20859
MH940245.1_Human_coronavirus_HKU1_isolate_SI17244,_complete_genome                           20766  .....A.....T........  20785
MK167038.1_Human_coronavirus_HKU1_strain_SC2521,_complete_genome                             20863  .....A.....T........  20882
KY674943.1_Human_coronavirus_HKU1_strain_N09-1605B,_complete_genome                          20848  .....A.....C........  20867
MN306043.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0841/2019,_complete_genome  20607  .....G.....T........  20626
NC_006213.1_Human_coronavirus_OC43_strain_ATCC_VR-759,_complete_genome                       20609  .....G.....T........  20628
MG197709.1_Human_coronavirus_OC43_strain_BJ-112,_complete_genome                             20517  .....G.....T........  20536
MK303619.1_Human_coronavirus_OC43_isolate_MDS6,_complete_genome                              20589  .....G.....T........  20608
MN026164.1_Human_coronavirus_OC43_isolate_OC43_KLF_01_2018,_complete_genome                  20663  .....G.....T........  20682
MN310476.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC9428/2018,_complete_genome  20571  .....G.....T........  20590
MN310478.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0776/2019,_complete_genome  20571  .....G.....T........  20590
MN306053.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC9430/2018,_complete_genome  20700  .....G.....T........  20719
MN306041.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0810/2019,_complete_genome  20606  .....G.....T........  20625
MN306036.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0682/2019,_complete_genome  20571  .....G.....T........  20590


Lambda      K        H
    1.47    0.726     1.39 

Gapped
Lambda      K        H
    1.47    0.726     1.39 

Effective search space used: 6051580


Query= Corn_OC_A404

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

KF430201.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-18/2010,_complete_genome  ...  37.4    3e-05
KF686346.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-12/2010,_complete_genome  ...  37.4    3e-05
KF686343.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-13/2010,_complete_genome  ...  37.4    3e-05
KF686341.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-10/2010,_complete_genome  ...  37.4    3e-05
KY674942.1_Human_coronavirus_HKU1_strain_N09-1627B,_complete_genome  ...  37.4    3e-05
KY674941.1_Human_coronavirus_HKU1_strain_N09-1663B,_complete_genome  ...  37.4    3e-05
KY674921.1_Human_coronavirus_HKU1_genotype_B_strain_N08-87,_complete_genome  ...  37.4    3e-05
MH940245.1_Human_coronavirus_HKU1_isolate_SI17244,_complete_genome    37.4    3e-05
MK167038.1_Human_coronavirus_HKU1_strain_SC2521,_complete_genome      37.4    3e-05
KY674943.1_Human_coronavirus_HKU1_strain_N09-1605B,_complete_genome  ...  37.4    3e-05
MN306043.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0841/2019,_complete_genome  ...  37.4    3e-05
NC_006213.1_Human_coronavirus_OC43_strain_ATCC_VR-759,_complete_genome  ...  37.4    3e-05
MG197709.1_Human_coronavirus_OC43_strain_BJ-112,_complete_genome      37.4    3e-05
MK303619.1_Human_coronavirus_OC43_isolate_MDS6,_complete_genome       37.4    3e-05
MN026164.1_Human_coronavirus_OC43_isolate_OC43_KLF_01_2018,_complete_genome  ...  37.4    3e-05
MN310476.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC9428/2018,_complete_genome  ...  37.4    3e-05
MN310478.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0776/2019,_complete_genome  ...  37.4    3e-05
MN306053.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC9430/2018,_complete_genome  ...  37.4    3e-05
MN306041.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0810/2019,_complete_genome  ...  37.4    3e-05
MN306036.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0682/2019,_complete_genome  ...  37.4    3e-05



Query_2                                                                                      1      GCATATTAACAGGWACAGCT  20
KF430201.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-18/2010,_complete_genome        21084  .............A......  21065
KF686346.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-12/2010,_complete_genome        21129  .............A......  21110
KF686343.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-13/2010,_complete_genome        21129  .............A......  21110
KF686341.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-10/2010,_complete_genome        20979  .............A......  20960
KY674942.1_Human_coronavirus_HKU1_strain_N09-1627B,_complete_genome                          21031  .............A......  21012
KY674941.1_Human_coronavirus_HKU1_strain_N09-1663B,_complete_genome                          20599  .............A......  20580
KY674921.1_Human_coronavirus_HKU1_genotype_B_strain_N08-87,_complete_genome                  21023  .............A......  21004
MH940245.1_Human_coronavirus_HKU1_isolate_SI17244,_complete_genome                           20949  .............A......  20930
MK167038.1_Human_coronavirus_HKU1_strain_SC2521,_complete_genome                             21046  .............A......  21027
KY674943.1_Human_coronavirus_HKU1_strain_N09-1605B,_complete_genome                          21031  .............A......  21012
MN306043.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0841/2019,_complete_genome  20790  .............T......  20771
NC_006213.1_Human_coronavirus_OC43_strain_ATCC_VR-759,_complete_genome                       20792  .............T......  20773
MG197709.1_Human_coronavirus_OC43_strain_BJ-112,_complete_genome                             20700  .............T......  20681
MK303619.1_Human_coronavirus_OC43_isolate_MDS6,_complete_genome                              20772  .............T......  20753
MN026164.1_Human_coronavirus_OC43_isolate_OC43_KLF_01_2018,_complete_genome                  20846  .............T......  20827
MN310476.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC9428/2018,_complete_genome  20754  .............T......  20735
MN310478.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0776/2019,_complete_genome  20754  .............T......  20735
MN306053.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC9430/2018,_complete_genome  20883  .............T......  20864
MN306041.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0810/2019,_complete_genome  20789  .............T......  20770
MN306036.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0682/2019,_complete_genome  20754  .............T......  20735


Lambda      K        H
    1.42    0.718     1.34 

Gapped
Lambda      K        H
    1.42    0.718     1.34 

Effective search space used: 5446242


Query= Corn_311OC_BC2

Length=24
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

KF430201.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-18/2010,_complete_genome  ...  42.4    1e-06
KF686346.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-12/2010,_complete_genome  ...  42.4    1e-06
KF686343.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-13/2010,_complete_genome  ...  42.4    1e-06
KF686341.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-10/2010,_complete_genome  ...  42.4    1e-06
KY674942.1_Human_coronavirus_HKU1_strain_N09-1627B,_complete_genome  ...  42.4    1e-06
KY674941.1_Human_coronavirus_HKU1_strain_N09-1663B,_complete_genome  ...  42.4    1e-06
KY674921.1_Human_coronavirus_HKU1_genotype_B_strain_N08-87,_complete_genome  ...  42.4    1e-06
MH940245.1_Human_coronavirus_HKU1_isolate_SI17244,_complete_genome    42.4    1e-06
MK167038.1_Human_coronavirus_HKU1_strain_SC2521,_complete_genome      42.4    1e-06
KY674943.1_Human_coronavirus_HKU1_strain_N09-1605B,_complete_genome  ...  42.4    1e-06
MN306043.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0841/2019,_complete_genome  ...  42.4    1e-06
NC_006213.1_Human_coronavirus_OC43_strain_ATCC_VR-759,_complete_genome  ...  42.4    1e-06
MG197709.1_Human_coronavirus_OC43_strain_BJ-112,_complete_genome      42.4    1e-06
MK303619.1_Human_coronavirus_OC43_isolate_MDS6,_complete_genome       42.4    1e-06
MN026164.1_Human_coronavirus_OC43_isolate_OC43_KLF_01_2018,_complete_genome  ...  42.4    1e-06
MN310476.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC9428/2018,_complete_genome  ...  42.4    1e-06
MN310478.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0776/2019,_complete_genome  ...  42.4    1e-06
MN306053.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC9430/2018,_complete_genome  ...  42.4    1e-06
MN306041.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0810/2019,_complete_genome  ...  42.4    1e-06
MN306036.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0682/2019,_complete_genome  ...  42.4    1e-06



Query_3                                                                                      1      GATGAATGTTGCTAAGTAYACYCA  24
KF430201.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-18/2010,_complete_genome        21011  ..................C..T..  21034
KF686346.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-12/2010,_complete_genome        21056  ..................C..T..  21079
KF686343.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-13/2010,_complete_genome        21056  ..................C..T..  21079
KF686341.1_Human_coronavirus_HKU1_strain_HKU1/human/USA/HKU1-10/2010,_complete_genome        20906  ..................C..T..  20929
KY674942.1_Human_coronavirus_HKU1_strain_N09-1627B,_complete_genome                          20958  ..................C..T..  20981
KY674941.1_Human_coronavirus_HKU1_strain_N09-1663B,_complete_genome                          20526  ..................C..T..  20549
KY674921.1_Human_coronavirus_HKU1_genotype_B_strain_N08-87,_complete_genome                  20950  ..................T..T..  20973
MH940245.1_Human_coronavirus_HKU1_isolate_SI17244,_complete_genome                           20876  ..................T..T..  20899
MK167038.1_Human_coronavirus_HKU1_strain_SC2521,_complete_genome                             20973  ..................T..T..  20996
KY674943.1_Human_coronavirus_HKU1_strain_N09-1605B,_complete_genome                          20958  ..................C..T..  20981
MN306043.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0841/2019,_complete_genome  20717  ..................T..T..  20740
NC_006213.1_Human_coronavirus_OC43_strain_ATCC_VR-759,_complete_genome                       20719  ..................T..T..  20742
MG197709.1_Human_coronavirus_OC43_strain_BJ-112,_complete_genome                             20627  ..................T..T..  20650
MK303619.1_Human_coronavirus_OC43_isolate_MDS6,_complete_genome                              20699  ..................T..T..  20722
MN026164.1_Human_coronavirus_OC43_isolate_OC43_KLF_01_2018,_complete_genome                  20773  ..................T..T..  20796
MN310476.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC9428/2018,_complete_genome  20681  ..................T..T..  20704
MN310478.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0776/2019,_complete_genome  20681  ..................T..T..  20704
MN306053.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC9430/2018,_complete_genome  20810  ..................T..T..  20833
MN306041.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0810/2019,_complete_genome  20716  ..................T..T..  20739
MN306036.1_Human_coronavirus_OC43_strain_HCoV_OC43/Seattle/USA/SC0682/2019,_complete_genome  20681  ..................T..T..  20704


Lambda      K        H
    1.45    0.723     1.37 

Gapped
Lambda      K        H
    1.45    0.723     1.37 

Effective search space used: 7866794


  Database: new_OC43_HKU1.fasta
    Posted date:  Jun 9, 2020  4:38 PM
  Number of letters in database: 605,358
  Number of sequences in database:  20



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2

BLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: new_PIV_1_sequence.fasta
           10 sequences; 155,118 total letters



Query= PIV1_HN_S342

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

MF973164.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/5S5,_complete_genome  ...  40.1    1e-06
KY967353.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/10F7/2015,_complete_genome  ...  40.1    1e-06
KX639498.1_Human_parainfluenza_virus_1_isolate_NM001,_complete_genome  ...  40.1    1e-06
KX570602.1_Human_parainfluenza_virus_1_isolate_AR001,_complete_genome  ...  40.1    1e-06
MG773273.1_Human_respirovirus_1_isolate_HPIV1/BuenosAires/ARG/001/2016,_complete_genome  ...  40.1    1e-06
MK167043.1_Human_respirovirus_1_strain_HPIV1/Los_Angeles/USA/CHLA36/2016,_complete_genome  ...  40.1    1e-06
KY674966.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/12O3/2016,_complete_genome  ...  40.1    1e-06
KY674940.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/9P4/2016,_complete_genome  ...  40.1    1e-06
MK167042.1_Human_respirovirus_1_strain_HPIV1/Los_Angeles/USA/CHLA45/2017,_complete_genome  ...  40.1    1e-06
MT232426.1_Human_respirovirus_1_isolate_2019AZ,_complete_genome       40.1    1e-06



Query_1                                                                                    1     CAGAAAAAGGATGGTCAAAA  20
MF973164.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/5S5,_complete_genome              7827  ....................  7808
KY967353.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/10F7/2015,_complete_genome        7795  ....................  7776
KX639498.1_Human_parainfluenza_virus_1_isolate_NM001,_complete_genome                      7845  ....................  7826
KX570602.1_Human_parainfluenza_virus_1_isolate_AR001,_complete_genome                      7831  ....................  7812
MG773273.1_Human_respirovirus_1_isolate_HPIV1/BuenosAires/ARG/001/2016,_complete_genome    7772  ....................  7753
MK167043.1_Human_respirovirus_1_strain_HPIV1/Los_Angeles/USA/CHLA36/2016,_complete_genome  7829  ....................  7810
KY674966.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/12O3/2016,_complete_genome        7795  ....................  7776
KY674940.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/9P4/2016,_complete_genome         7814  ....................  7795
MK167042.1_Human_respirovirus_1_strain_HPIV1/Los_Angeles/USA/CHLA45/2017,_complete_genome  7857  ....................  7838
MT232426.1_Human_respirovirus_1_isolate_2019AZ,_complete_genome                            7832  ....................  7813


Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 1550180


Query= PIV1_HN_A545

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

MF973164.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/5S5,_complete_genome  ...  37.4    9e-06
KY967353.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/10F7/2015,_complete_genome  ...  37.4    9e-06
KX639498.1_Human_parainfluenza_virus_1_isolate_NM001,_complete_genome  ...  37.4    9e-06
KX570602.1_Human_parainfluenza_virus_1_isolate_AR001,_complete_genome  ...  37.4    9e-06
MG773273.1_Human_respirovirus_1_isolate_HPIV1/BuenosAires/ARG/001/2016,_complete_genome  ...  37.4    9e-06
MK167043.1_Human_respirovirus_1_strain_HPIV1/Los_Angeles/USA/CHLA36/2016,_complete_genome  ...  37.4    9e-06
KY674966.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/12O3/2016,_complete_genome  ...  37.4    9e-06
KY674940.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/9P4/2016,_complete_genome  ...  37.4    9e-06
MK167042.1_Human_respirovirus_1_strain_HPIV1/Los_Angeles/USA/CHLA45/2017,_complete_genome  ...  37.4    9e-06
MT232426.1_Human_respirovirus_1_isolate_2019AZ,_complete_genome       37.4    9e-06



Query_2                                                                                    1     TCAAYGACAACAGGAAATCA  20
MF973164.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/5S5,_complete_genome              7624  ....C...............  7643
KY967353.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/10F7/2015,_complete_genome        7592  ....C...............  7611
KX639498.1_Human_parainfluenza_virus_1_isolate_NM001,_complete_genome                      7642  ....T...............  7661
KX570602.1_Human_parainfluenza_virus_1_isolate_AR001,_complete_genome                      7628  ....T...............  7647
MG773273.1_Human_respirovirus_1_isolate_HPIV1/BuenosAires/ARG/001/2016,_complete_genome    7569  ....T...............  7588
MK167043.1_Human_respirovirus_1_strain_HPIV1/Los_Angeles/USA/CHLA36/2016,_complete_genome  7626  ....T...............  7645
KY674966.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/12O3/2016,_complete_genome        7592  ....T...............  7611
KY674940.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/9P4/2016,_complete_genome         7611  ....T...............  7630
MK167042.1_Human_respirovirus_1_strain_HPIV1/Los_Angeles/USA/CHLA45/2017,_complete_genome  7654  ....C...............  7673
MT232426.1_Human_respirovirus_1_isolate_2019AZ,_complete_genome                            7629  ....T...............  7648


Lambda      K        H
    1.42    0.718     1.34 

Gapped
Lambda      K        H
    1.42    0.718     1.34 

Effective search space used: 1550180


Query= PIV1_342HN_BC1

Length=26
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

MF973164.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/5S5,_complete_genome  ...  52.0    5e-10
KY967353.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/10F7/2015,_complete_genome  ...  52.0    5e-10
KX639498.1_Human_parainfluenza_virus_1_isolate_NM001,_complete_genome  ...  52.0    5e-10
KX570602.1_Human_parainfluenza_virus_1_isolate_AR001,_complete_genome  ...  52.0    5e-10
MG773273.1_Human_respirovirus_1_isolate_HPIV1/BuenosAires/ARG/001/2016,_complete_genome  ...  52.0    5e-10
MK167043.1_Human_respirovirus_1_strain_HPIV1/Los_Angeles/USA/CHLA36/2016,_complete_genome  ...  52.0    5e-10
KY674966.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/12O3/2016,_complete_genome  ...  52.0    5e-10
KY674940.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/9P4/2016,_complete_genome  ...  52.0    5e-10
MK167042.1_Human_respirovirus_1_strain_HPIV1/Los_Angeles/USA/CHLA45/2017,_complete_genome  ...  52.0    5e-10
MT232426.1_Human_respirovirus_1_isolate_2019AZ,_complete_genome       52.0    5e-10



Query_3                                                                                    1     ACCCCTTGTTCCTGCAGCTATTACAG  26
MF973164.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/5S5,_complete_genome              7673  ..........................  7648
KY967353.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/10F7/2015,_complete_genome        7641  ..........................  7616
KX639498.1_Human_parainfluenza_virus_1_isolate_NM001,_complete_genome                      7691  ..........................  7666
KX570602.1_Human_parainfluenza_virus_1_isolate_AR001,_complete_genome                      7677  ..........................  7652
MG773273.1_Human_respirovirus_1_isolate_HPIV1/BuenosAires/ARG/001/2016,_complete_genome    7618  ..........................  7593
MK167043.1_Human_respirovirus_1_strain_HPIV1/Los_Angeles/USA/CHLA36/2016,_complete_genome  7675  ..........................  7650
KY674966.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/12O3/2016,_complete_genome        7641  ..........................  7616
KY674940.1_Human_respirovirus_1_strain_HPIV1/Seattle/USA/9P4/2016,_complete_genome         7660  ..........................  7635
MK167042.1_Human_respirovirus_1_strain_HPIV1/Los_Angeles/USA/CHLA45/2017,_complete_genome  7703  ..........................  7678
MT232426.1_Human_respirovirus_1_isolate_2019AZ,_complete_genome                            7678  ..........................  7653


Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 2480288


  Database: new_PIV_1_sequence.fasta
    Posted date:  Jun 9, 2020  4:38 PM
  Number of letters in database: 155,118
  Number of sequences in database:  10



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2

BLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: new_PIV_2_sequence.fasta
           10 sequences; 156,514 total letters



Query= PIV2_HN_S97

Length=19
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

KY986645.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/SC2761/2015,_complete_genome  ...  38.2    5e-06
KY674948.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/9C3/2016,_complete_genome  ...  38.2    5e-06
MF077312.1_Human_rubulavirus_2_isolate_hPIV2/USA/ACRI_0230/2017,_complete_genome  ...  38.2    5e-06
MG773274.1_Human_rubulavirus_2_isolate_HPIV2/BuenosAires/ARG/001/2017,_complete_genome  ...  38.2    5e-06
MH892406.1_Human_rubulavirus_2_strain_t146a293_HPIV2,_complete_genome  ...  38.2    5e-06
MG836418.1_Human_rubulavirus_2_isolate_HPIV2i/Zagreb.HR/49.15(1849),_complete_genome  ...  38.2    5e-06
MG836416.1_Human_rubulavirus_2_isolate_HPIV2i/Zagreb.HR/47.14(1688),_complete_genome  ...  38.2    5e-06
MH892405.1_Human_rubulavirus_2_strain_t146a292_HPIV2,_complete_genome  ...  38.2    5e-06
MN369034.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/SC9949/2018,_complete_genome  ...  38.2    5e-06
MK167022.1_Human_rubulavirus_2_strain_HPIV2/Los_Angeles/USA/CHLA40/2016,_complete_genome  ...  36.2    2e-05



Query_1                                                                                   1     ATAGGACGGTACCCATTGA  19
KY986645.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/SC2761/2015,_complete_genome      8124  ...................  8106
KY674948.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/9C3/2016,_complete_genome         8138  ...................  8120
MF077312.1_Human_rubulavirus_2_isolate_hPIV2/USA/ACRI_0230/2017,_complete_genome          8143  ...................  8125
MG773274.1_Human_rubulavirus_2_isolate_HPIV2/BuenosAires/ARG/001/2017,_complete_genome    8147  ...................  8129
MH892406.1_Human_rubulavirus_2_strain_t146a293_HPIV2,_complete_genome                     8146  ...................  8128
MG836418.1_Human_rubulavirus_2_isolate_HPIV2i/Zagreb.HR/49.15(1849),_complete_genome      8149  ...................  8131
MG836416.1_Human_rubulavirus_2_isolate_HPIV2i/Zagreb.HR/47.14(1688),_complete_genome      8149  ...................  8131
MH892405.1_Human_rubulavirus_2_strain_t146a292_HPIV2,_complete_genome                     8179  ...................  8161
MN369034.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/SC9949/2018,_complete_genome      8126  ...................  8108
MK167022.1_Human_rubulavirus_2_strain_HPIV2/Los_Angeles/USA/CHLA40/2016,_complete_genome  8148   ..................  8131


Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 1407726


Query= PIV2_HN_A341

Length=19
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

KY674948.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/9C3/2016,_complete_genome  ...  35.4    3e-05
MF077312.1_Human_rubulavirus_2_isolate_hPIV2/USA/ACRI_0230/2017,_complete_genome  ...  35.4    3e-05
MG773274.1_Human_rubulavirus_2_isolate_HPIV2/BuenosAires/ARG/001/2017,_complete_genome  ...  35.4    3e-05
MH892406.1_Human_rubulavirus_2_strain_t146a293_HPIV2,_complete_genome  ...  35.4    3e-05
MG836418.1_Human_rubulavirus_2_isolate_HPIV2i/Zagreb.HR/49.15(1849),_complete_genome  ...  35.4    3e-05
MG836416.1_Human_rubulavirus_2_isolate_HPIV2i/Zagreb.HR/47.14(1688),_complete_genome  ...  35.4    3e-05
MH892405.1_Human_rubulavirus_2_strain_t146a292_HPIV2,_complete_genome  ...  35.4    3e-05
MN369034.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/SC9949/2018,_complete_genome  ...  35.4    3e-05
KY986645.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/SC2761/2015,_complete_genome  ...  29.2    0.002
MK167022.1_Human_rubulavirus_2_strain_HPIV2/Los_Angeles/USA/CHLA40/2016,_complete_genome  ...  29.2    0.002



Query_2                                                                                   1     TTCAGAGTGCTRTTCTTAT  19
KY674948.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/9C3/2016,_complete_genome         7897  ...........G.......  7915
MF077312.1_Human_rubulavirus_2_isolate_hPIV2/USA/ACRI_0230/2017,_complete_genome          7902  ...........G.......  7920
MG773274.1_Human_rubulavirus_2_isolate_HPIV2/BuenosAires/ARG/001/2017,_complete_genome    7906  ...........G.......  7924
MH892406.1_Human_rubulavirus_2_strain_t146a293_HPIV2,_complete_genome                     7905  ...........G.......  7923
MG836418.1_Human_rubulavirus_2_isolate_HPIV2i/Zagreb.HR/49.15(1849),_complete_genome      7908  ...........G.......  7926
MG836416.1_Human_rubulavirus_2_isolate_HPIV2i/Zagreb.HR/47.14(1688),_complete_genome      7908  ...........G.......  7926
MH892405.1_Human_rubulavirus_2_strain_t146a292_HPIV2,_complete_genome                     7938  ...........A.......  7956
MN369034.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/SC9949/2018,_complete_genome      7885  ...........G.......  7903
KY986645.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/SC2761/2015,_complete_genome      7883  ...........G....     7898
MK167022.1_Human_rubulavirus_2_strain_HPIV2/Los_Angeles/USA/CHLA40/2016,_complete_genome  7908  ...........G....     7923


Lambda      K        H
    1.42    0.718     1.35 

Gapped
Lambda      K        H
    1.42    0.718     1.35 

Effective search space used: 1407726


Query= PIV2_113HN_BC1

Length=28
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

KY986645.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/SC2761/2015,_complete_genome  ...  56.0    4e-11
KY674948.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/9C3/2016,_complete_genome  ...  56.0    4e-11
MF077312.1_Human_rubulavirus_2_isolate_hPIV2/USA/ACRI_0230/2017,_complete_genome  ...  56.0    4e-11
MG773274.1_Human_rubulavirus_2_isolate_HPIV2/BuenosAires/ARG/001/2017,_complete_genome  ...  56.0    4e-11
MH892406.1_Human_rubulavirus_2_strain_t146a293_HPIV2,_complete_genome  ...  56.0    4e-11
MG836418.1_Human_rubulavirus_2_isolate_HPIV2i/Zagreb.HR/49.15(1849),_complete_genome  ...  56.0    4e-11
MG836416.1_Human_rubulavirus_2_isolate_HPIV2i/Zagreb.HR/47.14(1688),_complete_genome  ...  56.0    4e-11
MH892405.1_Human_rubulavirus_2_strain_t146a292_HPIV2,_complete_genome  ...  56.0    4e-11
MK167022.1_Human_rubulavirus_2_strain_HPIV2/Los_Angeles/USA/CHLA40/2016,_complete_genome  ...  56.0    4e-11
MN369034.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/SC9949/2018,_complete_genome  ...  56.0    4e-11



Query_3                                                                                   1     CAATAACATAGAGCCTACCTTCTGCACC  28
KY986645.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/SC2761/2015,_complete_genome      7999  ............................  7972
KY674948.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/9C3/2016,_complete_genome         8013  ............................  7986
MF077312.1_Human_rubulavirus_2_isolate_hPIV2/USA/ACRI_0230/2017,_complete_genome          8018  ............................  7991
MG773274.1_Human_rubulavirus_2_isolate_HPIV2/BuenosAires/ARG/001/2017,_complete_genome    8022  ............................  7995
MH892406.1_Human_rubulavirus_2_strain_t146a293_HPIV2,_complete_genome                     8021  ............................  7994
MG836418.1_Human_rubulavirus_2_isolate_HPIV2i/Zagreb.HR/49.15(1849),_complete_genome      8024  ............................  7997
MG836416.1_Human_rubulavirus_2_isolate_HPIV2i/Zagreb.HR/47.14(1688),_complete_genome      8024  ............................  7997
MH892405.1_Human_rubulavirus_2_strain_t146a292_HPIV2,_complete_genome                     8054  ............................  8027
MK167022.1_Human_rubulavirus_2_strain_HPIV2/Los_Angeles/USA/CHLA40/2016,_complete_genome  8024  ............................  7997
MN369034.1_Human_rubulavirus_2_strain_HPIV2/Seattle/USA/SC9949/2018,_complete_genome      8001  ............................  7974


Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 2658868


  Database: new_PIV_2_sequence.fasta
    Posted date:  Jun 9, 2020  4:38 PM
  Number of letters in database: 156,514
  Number of sequences in database:  10



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2

BLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: new_PIV_3_sequence.fasta
           10 sequences; 154,069 total letters



Query= PIV3_HN_N46S

Length=21
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

MN306052.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC9406/2019,_complete_genome  ...  37.4    9e-06
MF166751.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC3182/2017,_complete_genome  ...  37.4    9e-06
MF795095.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC1784/2017,_complete_genome  ...  37.4    9e-06
MG773276.1_Human_respirovirus_3_isolate_HPIV3/BuenosAires/ARG/002/2017,_complete_genome  ...  37.4    9e-06
MH428627.1_Human_respirovirus_3_isolate_UG-KAN-RW-2017,_complete_genome  ...  37.4    9e-06
MN145874.1_Human_respirovirus_3_strain_HPIV3/08/ZJ/CHN/2017,_complete_genome  ...  37.4    9e-06
MN306022.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC0309/2019,_complete_genome  ...  37.4    9e-06
LC530051.1_Human_respirovirus_3_sugckmmaht_NGO4_viral_cRNA,_complete_genome  ...  37.4    9e-06
MT210644.1_Human_respirovirus_3_isolate_USA/06-MAR-2020,_complete_genome  ...  37.4    9e-06
KY234287.1_Human_respirovirus_3_strain_HPIV3/China/BCH01/2016,_complete_genome  ...  29.2    0.003



Query_1                                                                                  1     GTGTTTTCCCVGGACACCCAG  21
MN306052.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC9406/2019,_complete_genome    7832  ..........A..........  7812
MF166751.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC3182/2017,_complete_genome    7818  ..........A..........  7798
MF795095.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC1784/2017,_complete_genome    7855  ..........A..........  7835
MG773276.1_Human_respirovirus_3_isolate_HPIV3/BuenosAires/ARG/002/2017,_complete_genome  7798  ..........A..........  7778
MH428627.1_Human_respirovirus_3_isolate_UG-KAN-RW-2017,_complete_genome                  7828  ..........A..........  7808
MN145874.1_Human_respirovirus_3_strain_HPIV3/08/ZJ/CHN/2017,_complete_genome             7863  ..........A..........  7843
MN306022.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC0309/2019,_complete_genome    7839  ..........A..........  7819
LC530051.1_Human_respirovirus_3_sugckmmaht_NGO4_viral_cRNA,_complete_genome              7824  ..........A..........  7804
MT210644.1_Human_respirovirus_3_isolate_USA/06-MAR-2020,_complete_genome                 7811  ..........A..........  7791
KY234287.1_Human_respirovirus_3_strain_HPIV3/China/BCH01/2016,_complete_genome           7895  .......T..A..........  7875


Lambda      K        H
    1.42    0.723     1.36 

Gapped
Lambda      K        H
    1.42    0.723     1.36 

Effective search space used: 1693659


Query= PIV3_HN_N46A

Length=26
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

MN306052.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC9406/2019,_complete_genome  ...  49.3    4e-09
MF166751.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC3182/2017,_complete_genome  ...  49.3    4e-09
KY234287.1_Human_respirovirus_3_strain_HPIV3/China/BCH01/2016,_complete_genome  ...  49.3    4e-09
MF795095.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC1784/2017,_complete_genome  ...  49.3    4e-09
MN306022.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC0309/2019,_complete_genome  ...  49.3    4e-09
MG773276.1_Human_respirovirus_3_isolate_HPIV3/BuenosAires/ARG/002/2017,_complete_genome  ...  43.2    2e-07
MH428627.1_Human_respirovirus_3_isolate_UG-KAN-RW-2017,_complete_genome  ...  43.2    2e-07
LC530051.1_Human_respirovirus_3_sugckmmaht_NGO4_viral_cRNA,_complete_genome  ...  43.2    2e-07
MT210644.1_Human_respirovirus_3_isolate_USA/06-MAR-2020,_complete_genome  ...  43.2    2e-07
MN145874.1_Human_respirovirus_3_strain_HPIV3/08/ZJ/CHN/2017,_complete_genome  ...  41.2    1e-06



Query_2                                                                                  1     GTCAAYTATGATGGCTCAATCTCAAC  26
MN306052.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC9406/2019,_complete_genome    7631  .....T....................  7656
MF166751.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC3182/2017,_complete_genome    7617  .....C....................  7642
KY234287.1_Human_respirovirus_3_strain_HPIV3/China/BCH01/2016,_complete_genome           7694  .....T....................  7719
MF795095.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC1784/2017,_complete_genome    7654  .....T....................  7679
MN306022.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC0309/2019,_complete_genome    7638  .....T....................  7663
MG773276.1_Human_respirovirus_3_isolate_HPIV3/BuenosAires/ARG/002/2017,_complete_genome  7597  .....T.................     7619
MH428627.1_Human_respirovirus_3_isolate_UG-KAN-RW-2017,_complete_genome                  7627  .....T.................     7649
LC530051.1_Human_respirovirus_3_sugckmmaht_NGO4_viral_cRNA,_complete_genome              7623  .....T.................     7645
MT210644.1_Human_respirovirus_3_isolate_USA/06-MAR-2020,_complete_genome                 7610  .....T.................     7632
MN145874.1_Human_respirovirus_3_strain_HPIV3/08/ZJ/CHN/2017,_complete_genome             7662  .....T................      7683


Lambda      K        H
    1.41    0.716     1.34 

Gapped
Lambda      K        H
    1.41    0.716     1.34 

Effective search space used: 2463504


Query= PIV3_46HN_BC1

Length=26
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

MN306052.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC9406/2019,_complete_genome  ...  49.3    4e-09
MF166751.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC3182/2017,_complete_genome  ...  49.3    4e-09
KY234287.1_Human_respirovirus_3_strain_HPIV3/China/BCH01/2016,_complete_genome  ...  49.3    4e-09
MF795095.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC1784/2017,_complete_genome  ...  49.3    4e-09
MG773276.1_Human_respirovirus_3_isolate_HPIV3/BuenosAires/ARG/002/2017,_complete_genome  ...  49.3    4e-09
MH428627.1_Human_respirovirus_3_isolate_UG-KAN-RW-2017,_complete_genome  ...  49.3    4e-09
MN145874.1_Human_respirovirus_3_strain_HPIV3/08/ZJ/CHN/2017,_complete_genome  ...  49.3    4e-09
MN306022.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC0309/2019,_complete_genome  ...  49.3    4e-09
LC530051.1_Human_respirovirus_3_sugckmmaht_NGO4_viral_cRNA,_complete_genome  ...  49.3    4e-09
MT210644.1_Human_respirovirus_3_isolate_USA/06-MAR-2020,_complete_genome  ...  49.3    4e-09



Query_3                                                                                  1     ATGTTCAAGACCTCCATACCCRAGAA  26
MN306052.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC9406/2019,_complete_genome    7780  .....................G....  7755
MF166751.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC3182/2017,_complete_genome    7766  .....................A....  7741
KY234287.1_Human_respirovirus_3_strain_HPIV3/China/BCH01/2016,_complete_genome           7843  .....................G....  7818
MF795095.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC1784/2017,_complete_genome    7803  .....................A....  7778
MG773276.1_Human_respirovirus_3_isolate_HPIV3/BuenosAires/ARG/002/2017,_complete_genome  7746  .....................G....  7721
MH428627.1_Human_respirovirus_3_isolate_UG-KAN-RW-2017,_complete_genome                  7776  .....................G....  7751
MN145874.1_Human_respirovirus_3_strain_HPIV3/08/ZJ/CHN/2017,_complete_genome             7811  .....................G....  7786
MN306022.1_Human_respirovirus_3_strain_HPIV3/Seattle/USA/SC0309/2019,_complete_genome    7787  .....................G....  7762
LC530051.1_Human_respirovirus_3_sugckmmaht_NGO4_viral_cRNA,_complete_genome              7772  .....................G....  7747
MT210644.1_Human_respirovirus_3_isolate_USA/06-MAR-2020,_complete_genome                 7759  .....................G....  7734


Lambda      K        H
    1.41    0.716     1.34 

Gapped
Lambda      K        H
    1.41    0.716     1.34 

Effective search space used: 2463504


  Database: new_PIV_3_sequence.fasta
    Posted date:  Jun 9, 2020  4:38 PM
  Number of letters in database: 154,069
  Number of sequences in database:  10



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2

BLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: new_PIV_4_sequence.fasta
           10 sequences; 170,760 total letters



Query= PIV4_HN_S786

Length=19
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

MN306058.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/SC9597/2019,_complete_genome  ...  32.4    3e-04
KY986647.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/SC3019/2015,_complete_genome  ...  32.4    3e-04
KY629773.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/16-J4/2016,_complete_genome  ...  32.4    3e-04
MN369047.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9717/2018,_complete_genome  ...  30.3    0.001
MN306033.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0620/2019,_complete_genome  ...  30.3    0.001
MN306038.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0751/2019,_complete_genome  ...  30.3    0.001
MN306027.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0377/2019,_complete_genome  ...  30.3    0.001
MH591216.1_UNVERIFIED:_Human_parainfluenza_virus_4a_strain_MCL-18-H-1140,_complete_genome  ...  30.3    0.001
MN369032.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9971/2018,_complete_genome  ...  30.3    0.001



Query_1                                                                                         1     ACTCGACYTTRAAATAAGG  19
MN306058.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/SC9597/2019,_complete_genome  8190  .......C..G........  8172
KY986647.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/SC3019/2015,_complete_genome  8195  .......C..G........  8177
KY629773.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/16-J4/2016,_complete_genome   8185  .......C..G........  8167
MN369047.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9717/2018,_complete_genome  8234   ......T..A........  8217
MN306033.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0620/2019,_complete_genome  8233   ......T..A........  8216
MN306038.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0751/2019,_complete_genome  8233   ......T..A........  8216
MN306027.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0377/2019,_complete_genome  8191   ......T..A........  8174
MH591216.1_UNVERIFIED:_Human_parainfluenza_virus_4a_strain_MCL-18-H-1140,_complete_genome       8240   ......T..A........  8223
MN369032.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9971/2018,_complete_genome  8235   ......T..A........  8218


Lambda      K        H
    1.48    0.726     1.39 

Gapped
Lambda      K        H
    1.48    0.726     1.39 

Effective search space used: 1535940


Query= PIV4_HN_A924

Length=19
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

MN369047.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9717/2018,_complete_genome  ...  35.4    3e-05
MN306033.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0620/2019,_complete_genome  ...  35.4    3e-05
MN306056.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9537/2019,_complete_genome  ...  35.4    3e-05
KY986647.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/SC3019/2015,_complete_genome  ...  35.4    3e-05
KY629773.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/16-J4/2016,_complete_genome  ...  35.4    3e-05
MN306038.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0751/2019,_complete_genome  ...  35.4    3e-05
MN306027.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0377/2019,_complete_genome  ...  35.4    3e-05
MH591216.1_UNVERIFIED:_Human_parainfluenza_virus_4a_strain_MCL-18-H-1140,_complete_genome  ...  35.4    3e-05
MN369032.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9971/2018,_complete_genome  ...  35.4    3e-05



Query_2                                                                                         1     CAAACYCATTGGTGTTATA  19
MN369047.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9717/2018,_complete_genome  8106  .....C.............  8124
MN306033.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0620/2019,_complete_genome  8105  .....C.............  8123
MN306056.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9537/2019,_complete_genome  8075  .....C.............  8093
KY986647.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/SC3019/2015,_complete_genome  8066  .....T.............  8084
KY629773.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/16-J4/2016,_complete_genome   8056  .....T.............  8074
MN306038.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0751/2019,_complete_genome  8105  .....C.............  8123
MN306027.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0377/2019,_complete_genome  8063  .....C.............  8081
MH591216.1_UNVERIFIED:_Human_parainfluenza_virus_4a_strain_MCL-18-H-1140,_complete_genome       8112  .....C.............  8130
MN369032.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9971/2018,_complete_genome  8107  .....C.............  8125


Lambda      K        H
    1.42    0.718     1.35 

Gapped
Lambda      K        H
    1.42    0.718     1.35 

Effective search space used: 1535940


Query= PIV4_786HN_BC1

Length=26
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

MN369047.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9717/2018,_complete_genome  ...  43.4    2e-07
MN306033.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0620/2019,_complete_genome  ...  43.4    2e-07
MN306056.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9537/2019,_complete_genome  ...  43.4    2e-07
KY986647.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/SC3019/2015,_complete_genome  ...  43.4    2e-07
KY629773.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/16-J4/2016,_complete_genome  ...  43.4    2e-07
MN306038.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0751/2019,_complete_genome  ...  43.4    2e-07
MN306027.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0377/2019,_complete_genome  ...  43.4    2e-07
MH591216.1_UNVERIFIED:_Human_parainfluenza_virus_4a_strain_MCL-18-H-1140,_complete_genome  ...  43.4    2e-07
MN369032.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9971/2018,_complete_genome  ...  43.4    2e-07



Query_3                                                                                         1     TGTAAGGTTCCTAGWGATAYATAYTG  26
MN369047.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9717/2018,_complete_genome  8197  ..............T....C...T..  8172
MN306033.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0620/2019,_complete_genome  8196  ..............T....C...T..  8171
MN306056.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9537/2019,_complete_genome  8166  ..............T....C...T..  8141
KY986647.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/SC3019/2015,_complete_genome  8157  ..............A....C...T..  8132
KY629773.1_Human_parainfluenza_virus_4b_strain_HPIV4b/Seattle/USA/16-J4/2016,_complete_genome   8147  ..............A....C...C..  8122
MN306038.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0751/2019,_complete_genome  8196  ..............T....C...T..  8171
MN306027.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC0377/2019,_complete_genome  8154  ..............T....C...T..  8129
MH591216.1_UNVERIFIED:_Human_parainfluenza_virus_4a_strain_MCL-18-H-1140,_complete_genome       8203  ..............T....C...T..  8178
MN369032.1_Human_parainfluenza_virus_4a_strain_HPIV4a/Seattle/USA/SC9971/2018,_complete_genome  8198  ..............T....C...T..  8173


Lambda      K        H
    1.49    0.728     1.40 

Gapped
Lambda      K        H
    1.49    0.728     1.40 

Effective search space used: 2730560


  Database: new_PIV_4_sequence.fasta
    Posted date:  Jun 9, 2020  4:38 PM
  Number of letters in database: 170,760
  Number of sequences in database:  10



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2

BLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: new_RSV_sequence.fasta
           10 sequences; 151,983 total letters



Query= RSV_FP_S481

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

MH327947.1_Human_respiratory_syncytial_virus_B_strain_NIV1735504,_complete_genome  ...  32.4    3e-04
MK749868.1_Human_respiratory_syncytial_virus_B_strain_RSVB/Homo_sapiens/NIC/IIIn_16_0049_01NT/2016,_complete_genome  ...  32.4    3e-04
MT040081.1_Human_respiratory_syncytial_virus_B_isolate_RSVB/USA/UAMS-DID-006/2016,_complete_genome  ...  32.4    3e-04
MT107528.1_Human_respiratory_syncytial_virus_B_isolate_HRSV/B/Bern/2019,_complete_genome  ...  32.4    3e-04
MT373703.1_Human_respiratory_syncytial_virus_B_strain_RSVB/Novosibirsk/242/2019,_complete_genome  ...  32.4    3e-04
MH447959.1_Human_respiratory_syncytial_virus_A_isolate_TH/B23576/2017,_complete_genome  ...  32.4    3e-04
MK749867.1_Human_respiratory_syncytial_virus_A_strain_RSVA/Homo_sapiens/NIC/IIIn_16_0242_01NT/2016,_complete_genome  ...  32.4    3e-04
MN306017.1_Human_respiratory_syncytial_virus_A_strain_SC0135,_complete_genome  ...  32.4    3e-04
MN630102.1_Human_respiratory_syncytial_virus_A_isolate_RSVA/USA/ACRI-039/2016,_complete_genome  ...  32.4    3e-04
MN630088.1_Human_respiratory_syncytial_virus_A_isolate_RSVA/USA/UAMS-DID-002/2016,_complete_genome  ...  32.4    3e-04



Query_1                                                                                                              1     TTTATDATYCCACGATTTTT  20
MH327947.1_Human_respiratory_syncytial_virus_B_strain_NIV1735504,_complete_genome                                    7034  .....A..T...........  7015
MK749868.1_Human_respiratory_syncytial_virus_B_strain_RSVB/Homo_sapiens/NIC/IIIn_16_0049_01NT/2016,_complete_genome  6979  .....A..T...........  6960
MT040081.1_Human_respiratory_syncytial_virus_B_isolate_RSVB/USA/UAMS-DID-006/2016,_complete_genome                   6943  .....A..T...........  6924
MT107528.1_Human_respiratory_syncytial_virus_B_isolate_HRSV/B/Bern/2019,_complete_genome                             7040  .....A..T...........  7021
MT373703.1_Human_respiratory_syncytial_virus_B_strain_RSVB/Novosibirsk/242/2019,_complete_genome                     6916  .....A..T...........  6897
MH447959.1_Human_respiratory_syncytial_virus_A_isolate_TH/B23576/2017,_complete_genome                               7018  .....G..C...........  6999
MK749867.1_Human_respiratory_syncytial_virus_A_strain_RSVA/Homo_sapiens/NIC/IIIn_16_0242_01NT/2016,_complete_genome  6943  .....G..C...........  6924
MN306017.1_Human_respiratory_syncytial_virus_A_strain_SC0135,_complete_genome                                        7006  .....G..C...........  6987
MN630102.1_Human_respiratory_syncytial_virus_A_isolate_RSVA/USA/ACRI-039/2016,_complete_genome                       7005  .....G..C...........  6986
MN630088.1_Human_respiratory_syncytial_virus_A_isolate_RSVA/USA/UAMS-DID-002/2016,_complete_genome                   7010  .....G..C...........  6991


Lambda      K        H
    1.48    0.732     1.40 

Gapped
Lambda      K        H
    1.48    0.732     1.40 

Effective search space used: 1670823


Query= RSV_FP_A671

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

MH327947.1_Human_respiratory_syncytial_virus_B_strain_NIV1735504,_complete_genome  ...  37.4    8e-06
MK749868.1_Human_respiratory_syncytial_virus_B_strain_RSVB/Homo_sapiens/NIC/IIIn_16_0049_01NT/2016,_complete_genome  ...  37.4    8e-06
MT040081.1_Human_respiratory_syncytial_virus_B_isolate_RSVB/USA/UAMS-DID-006/2016,_complete_genome  ...  37.4    8e-06
MT107528.1_Human_respiratory_syncytial_virus_B_isolate_HRSV/B/Bern/2019,_complete_genome  ...  37.4    8e-06
MT373703.1_Human_respiratory_syncytial_virus_B_strain_RSVB/Novosibirsk/242/2019,_complete_genome  ...  37.4    8e-06
MH447959.1_Human_respiratory_syncytial_virus_A_isolate_TH/B23576/2017,_complete_genome  ...  37.4    8e-06
MK749867.1_Human_respiratory_syncytial_virus_A_strain_RSVA/Homo_sapiens/NIC/IIIn_16_0242_01NT/2016,_complete_genome  ...  37.4    8e-06
MN306017.1_Human_respiratory_syncytial_virus_A_strain_SC0135,_complete_genome  ...  37.4    8e-06
MN630102.1_Human_respiratory_syncytial_virus_A_isolate_RSVA/USA/ACRI-039/2016,_complete_genome  ...  37.4    8e-06
MN630088.1_Human_respiratory_syncytial_virus_A_isolate_RSVA/USA/UAMS-DID-002/2016,_complete_genome  ...  37.4    8e-06



Query_2                                                                                                              1     ATGAACAGTTTRACATTACC  20
MH327947.1_Human_respiratory_syncytial_virus_B_strain_NIV1735504,_complete_genome                                    6844  ...........G........  6863
MK749868.1_Human_respiratory_syncytial_virus_B_strain_RSVB/Homo_sapiens/NIC/IIIn_16_0049_01NT/2016,_complete_genome  6789  ...........G........  6808
MT040081.1_Human_respiratory_syncytial_virus_B_isolate_RSVB/USA/UAMS-DID-006/2016,_complete_genome                   6753  ...........G........  6772
MT107528.1_Human_respiratory_syncytial_virus_B_isolate_HRSV/B/Bern/2019,_complete_genome                             6850  ...........G........  6869
MT373703.1_Human_respiratory_syncytial_virus_B_strain_RSVB/Novosibirsk/242/2019,_complete_genome                     6726  ...........G........  6745
MH447959.1_Human_respiratory_syncytial_virus_A_isolate_TH/B23576/2017,_complete_genome                               6828  ...........A........  6847
MK749867.1_Human_respiratory_syncytial_virus_A_strain_RSVA/Homo_sapiens/NIC/IIIn_16_0242_01NT/2016,_complete_genome  6753  ...........A........  6772
MN306017.1_Human_respiratory_syncytial_virus_A_strain_SC0135,_complete_genome                                        6816  ...........A........  6835
MN630102.1_Human_respiratory_syncytial_virus_A_isolate_RSVA/USA/ACRI-039/2016,_complete_genome                       6815  ...........A........  6834
MN630088.1_Human_respiratory_syncytial_virus_A_isolate_RSVA/USA/UAMS-DID-002/2016,_complete_genome                   6820  ...........A........  6839


Lambda      K        H
    1.42    0.718     1.34 

Gapped
Lambda      K        H
    1.42    0.718     1.34 

Effective search space used: 1518830


Query= RSV_481FP_BC1

Length=28
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

MH327947.1_Human_respiratory_syncytial_virus_B_strain_NIV1735504,_complete_genome  ...  45.3    6e-08
MK749868.1_Human_respiratory_syncytial_virus_B_strain_RSVB/Homo_sapiens/NIC/IIIn_16_0049_01NT/2016,_complete_genome  ...  45.3    6e-08
MT040081.1_Human_respiratory_syncytial_virus_B_isolate_RSVB/USA/UAMS-DID-006/2016,_complete_genome  ...  45.3    6e-08
MT107528.1_Human_respiratory_syncytial_virus_B_isolate_HRSV/B/Bern/2019,_complete_genome  ...  45.3    6e-08
MT373703.1_Human_respiratory_syncytial_virus_B_strain_RSVB/Novosibirsk/242/2019,_complete_genome  ...  45.3    6e-08
MH447959.1_Human_respiratory_syncytial_virus_A_isolate_TH/B23576/2017,_complete_genome  ...  45.3    6e-08
MK749867.1_Human_respiratory_syncytial_virus_A_strain_RSVA/Homo_sapiens/NIC/IIIn_16_0242_01NT/2016,_complete_genome  ...  45.3    6e-08
MN630102.1_Human_respiratory_syncytial_virus_A_isolate_RSVA/USA/ACRI-039/2016,_complete_genome  ...  45.3    6e-08
MN630088.1_Human_respiratory_syncytial_virus_A_isolate_RSVA/USA/UAMS-DID-002/2016,_complete_genome  ...  45.3    6e-08
MN306017.1_Human_respiratory_syncytial_virus_A_strain_SC0135,_complete_genome  ...  38.9    5e-06



Query_3                                                                                                              1     GAGCTGCTTAYRTCTGTTTTTGADGTCA  28
MH327947.1_Human_respiratory_syncytial_virus_B_strain_NIV1735504,_complete_genome                                    6950  ..........TG...........T....  6923
MK749868.1_Human_respiratory_syncytial_virus_B_strain_RSVB/Homo_sapiens/NIC/IIIn_16_0049_01NT/2016,_complete_genome  6895  ..........TG...........T....  6868
MT040081.1_Human_respiratory_syncytial_virus_B_isolate_RSVB/USA/UAMS-DID-006/2016,_complete_genome                   6859  ..........TG...........T....  6832
MT107528.1_Human_respiratory_syncytial_virus_B_isolate_HRSV/B/Bern/2019,_complete_genome                             6956  ..........TG...........T....  6929
MT373703.1_Human_respiratory_syncytial_virus_B_strain_RSVB/Novosibirsk/242/2019,_complete_genome                     6832  ..........TG...........T....  6805
MH447959.1_Human_respiratory_syncytial_virus_A_isolate_TH/B23576/2017,_complete_genome                               6934  ..........CA...........A....  6907
MK749867.1_Human_respiratory_syncytial_virus_A_strain_RSVA/Homo_sapiens/NIC/IIIn_16_0242_01NT/2016,_complete_genome  6859  ..........CA...........A....  6832
MN630102.1_Human_respiratory_syncytial_virus_A_isolate_RSVA/USA/ACRI-039/2016,_complete_genome                       6921  ..........CA...........A....  6894
MN630088.1_Human_respiratory_syncytial_virus_A_isolate_RSVA/USA/UAMS-DID-002/2016,_complete_genome                   6926  ..........CA...........A....  6899
MN306017.1_Human_respiratory_syncytial_virus_A_strain_SC0135,_complete_genome                                        6919     .......CA...........A....  6895


Lambda      K        H
    1.48    0.731     1.40 

Gapped
Lambda      K        H
    1.48    0.731     1.40 

Effective search space used: 2733894


  Database: new_RSV_sequence.fasta
    Posted date:  Jun 9, 2020  4:38 PM
  Number of letters in database: 151,983
  Number of sequences in database:  10



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2

BLASTN 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.



Database: SARS-coV_2.fasta
           10 sequences; 298,040 total letters



Query= CoV-2-S-F

Length=24
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

hCoV-19/Taiwan/TSGH-24/2020|EPI_ISL_436099|2020-04-02                 48.1    1e-08
hCoV-19/Australia/QLDID936/2020|EPI_ISL_436098|2020-03-23             48.1    1e-08
hCoV-19/Japan/Donner8/2020|EPI_ISL_438953|2020-04-06                  48.1    1e-08
hCoV-19/Spain/Valencia216/2020|EPI_ISL_436311|2020-03-28              48.1    1e-08
hCoV-19/Shandong/LY003/2020|EPI_ISL_414936|2020-01-23                 48.1    1e-08
hCoV-19/USA/NC_200173/2020|EPI_ISL_424353|2020-04-02                  48.1    1e-08
hCoV-19/USA/AK-PHL037/2020|EPI_ISL_424346|2020-03-21                  48.1    1e-08
hCoV-19/Italy/INMI8/2020|EPI_ISL_424342|2020-03-07                    48.1    1e-08
hCoV-19/Vietnam/IBT-14Mar/2020|EPI_ISL_448222|2020-03-15              48.1    1e-08
hCoV-19/CzechRepublic/IAB_1/2020|EPI_ISL_426883|2020-03-27            48.1    1e-08



Query_1                                                     1      CAAATACTTCTAACCAGGTTGCTG  24
hCoV-19/Taiwan/TSGH-24/2020|EPI_ISL_436099|2020-04-02       23367  ........................  23390
hCoV-19/Australia/QLDID936/2020|EPI_ISL_436098|2020-03-23   23366  ........................  23389
hCoV-19/Japan/Donner8/2020|EPI_ISL_438953|2020-04-06        23313  ........................  23336
hCoV-19/Spain/Valencia216/2020|EPI_ISL_436311|2020-03-28    23320  ........................  23343
hCoV-19/Shandong/LY003/2020|EPI_ISL_414936|2020-01-23       23351  ........................  23374
hCoV-19/USA/NC_200173/2020|EPI_ISL_424353|2020-04-02        23342  ........................  23365
hCoV-19/USA/AK-PHL037/2020|EPI_ISL_424346|2020-03-21        23354  ........................  23377
hCoV-19/Italy/INMI8/2020|EPI_ISL_424342|2020-03-07          23342  ........................  23365
hCoV-19/Vietnam/IBT-14Mar/2020|EPI_ISL_448222|2020-03-15    23348  ........................  23371
hCoV-19/CzechRepublic/IAB_1/2020|EPI_ISL_426883|2020-03-27  23352  ........................  23375


Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 3873090


Query= CoV-2-S-R

Length=24
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

hCoV-19/Taiwan/TSGH-24/2020|EPI_ISL_436099|2020-04-02                 48.1    1e-08
hCoV-19/Australia/QLDID936/2020|EPI_ISL_436098|2020-03-23             48.1    1e-08
hCoV-19/Japan/Donner8/2020|EPI_ISL_438953|2020-04-06                  48.1    1e-08
hCoV-19/Spain/Valencia216/2020|EPI_ISL_436311|2020-03-28              48.1    1e-08
hCoV-19/Shandong/LY003/2020|EPI_ISL_414936|2020-01-23                 48.1    1e-08
hCoV-19/USA/NC_200173/2020|EPI_ISL_424353|2020-04-02                  48.1    1e-08
hCoV-19/USA/AK-PHL037/2020|EPI_ISL_424346|2020-03-21                  48.1    1e-08
hCoV-19/Italy/INMI8/2020|EPI_ISL_424342|2020-03-07                    48.1    1e-08
hCoV-19/Vietnam/IBT-14Mar/2020|EPI_ISL_448222|2020-03-15              48.1    1e-08
hCoV-19/CzechRepublic/IAB_1/2020|EPI_ISL_426883|2020-03-27            48.1    1e-08



Query_2                                                     1      ACACGCCAAGTAGGAGTAAGTTGA  24
hCoV-19/Taiwan/TSGH-24/2020|EPI_ISL_436099|2020-04-02       23466  ........................  23443
hCoV-19/Australia/QLDID936/2020|EPI_ISL_436098|2020-03-23   23465  ........................  23442
hCoV-19/Japan/Donner8/2020|EPI_ISL_438953|2020-04-06        23412  ........................  23389
hCoV-19/Spain/Valencia216/2020|EPI_ISL_436311|2020-03-28    23419  ........................  23396
hCoV-19/Shandong/LY003/2020|EPI_ISL_414936|2020-01-23       23450  ........................  23427
hCoV-19/USA/NC_200173/2020|EPI_ISL_424353|2020-04-02        23441  ........................  23418
hCoV-19/USA/AK-PHL037/2020|EPI_ISL_424346|2020-03-21        23453  ........................  23430
hCoV-19/Italy/INMI8/2020|EPI_ISL_424342|2020-03-07          23441  ........................  23418
hCoV-19/Vietnam/IBT-14Mar/2020|EPI_ISL_448222|2020-03-15    23447  ........................  23424
hCoV-19/CzechRepublic/IAB_1/2020|EPI_ISL_426883|2020-03-27  23451  ........................  23428


Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 3873090


Query= CoV-2-S-TZ

Length=25
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

hCoV-19/Taiwan/TSGH-24/2020|EPI_ISL_436099|2020-04-02                 50.1    4e-09
hCoV-19/Australia/QLDID936/2020|EPI_ISL_436098|2020-03-23             50.1    4e-09
hCoV-19/Japan/Donner8/2020|EPI_ISL_438953|2020-04-06                  50.1    4e-09
hCoV-19/Spain/Valencia216/2020|EPI_ISL_436311|2020-03-28              50.1    4e-09
hCoV-19/Shandong/LY003/2020|EPI_ISL_414936|2020-01-23                 50.1    4e-09
hCoV-19/USA/NC_200173/2020|EPI_ISL_424353|2020-04-02                  50.1    4e-09
hCoV-19/USA/AK-PHL037/2020|EPI_ISL_424346|2020-03-21                  50.1    4e-09
hCoV-19/Italy/INMI8/2020|EPI_ISL_424342|2020-03-07                    50.1    4e-09
hCoV-19/Vietnam/IBT-14Mar/2020|EPI_ISL_448222|2020-03-15              50.1    4e-09
hCoV-19/CzechRepublic/IAB_1/2020|EPI_ISL_426883|2020-03-27            50.1    4e-09



Query_3                                                     1      CAGAAGTCCCTGTTGCTATTCATGC  25
hCoV-19/Taiwan/TSGH-24/2020|EPI_ISL_436099|2020-04-02       23415  .........................  23439
hCoV-19/Australia/QLDID936/2020|EPI_ISL_436098|2020-03-23   23414  .........................  23438
hCoV-19/Japan/Donner8/2020|EPI_ISL_438953|2020-04-06        23361  .........................  23385
hCoV-19/Spain/Valencia216/2020|EPI_ISL_436311|2020-03-28    23368  .........................  23392
hCoV-19/Shandong/LY003/2020|EPI_ISL_414936|2020-01-23       23399  .........................  23423
hCoV-19/USA/NC_200173/2020|EPI_ISL_424353|2020-04-02        23390  .........................  23414
hCoV-19/USA/AK-PHL037/2020|EPI_ISL_424346|2020-03-21        23402  .........................  23426
hCoV-19/Italy/INMI8/2020|EPI_ISL_424342|2020-03-07          23390  .........................  23414
hCoV-19/Vietnam/IBT-14Mar/2020|EPI_ISL_448222|2020-03-15    23396  .........................  23420
hCoV-19/CzechRepublic/IAB_1/2020|EPI_ISL_426883|2020-03-27  23400  .........................  23424


Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 4171020


Query= CoV-2-N-F

Length=20
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

hCoV-19/Taiwan/TSGH-24/2020|EPI_ISL_436099|2020-04-02                 40.1    2e-06
hCoV-19/Australia/QLDID936/2020|EPI_ISL_436098|2020-03-23             40.1    2e-06
hCoV-19/Japan/Donner8/2020|EPI_ISL_438953|2020-04-06                  40.1    2e-06
hCoV-19/Spain/Valencia216/2020|EPI_ISL_436311|2020-03-28              40.1    2e-06
hCoV-19/Shandong/LY003/2020|EPI_ISL_414936|2020-01-23                 40.1    2e-06
hCoV-19/USA/NC_200173/2020|EPI_ISL_424353|2020-04-02                  40.1    2e-06
hCoV-19/USA/AK-PHL037/2020|EPI_ISL_424346|2020-03-21                  40.1    2e-06
hCoV-19/Italy/INMI8/2020|EPI_ISL_424342|2020-03-07                    40.1    2e-06
hCoV-19/Vietnam/IBT-14Mar/2020|EPI_ISL_448222|2020-03-15              40.1    2e-06
hCoV-19/CzechRepublic/IAB_1/2020|EPI_ISL_426883|2020-03-27            40.1    2e-06



Query_4                                                     1      TGATTACAAACATTGGCCGC  20
hCoV-19/Taiwan/TSGH-24/2020|EPI_ISL_436099|2020-04-02       29161  ....................  29180
hCoV-19/Australia/QLDID936/2020|EPI_ISL_436098|2020-03-23   29160  ....................  29179
hCoV-19/Japan/Donner8/2020|EPI_ISL_438953|2020-04-06        29107  ....................  29126
hCoV-19/Spain/Valencia216/2020|EPI_ISL_436311|2020-03-28    29114  ....................  29133
hCoV-19/Shandong/LY003/2020|EPI_ISL_414936|2020-01-23       29145  ....................  29164
hCoV-19/USA/NC_200173/2020|EPI_ISL_424353|2020-04-02        29136  ....................  29155
hCoV-19/USA/AK-PHL037/2020|EPI_ISL_424346|2020-03-21        29148  ....................  29167
hCoV-19/Italy/INMI8/2020|EPI_ISL_424342|2020-03-07          29136  ....................  29155
hCoV-19/Vietnam/IBT-14Mar/2020|EPI_ISL_448222|2020-03-15    29142  ....................  29161
hCoV-19/CzechRepublic/IAB_1/2020|EPI_ISL_426883|2020-03-27  29146  ....................  29165


Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 2681370


Query= CoV-2-N-R

Length=22
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

hCoV-19/Taiwan/TSGH-24/2020|EPI_ISL_436099|2020-04-02                 36.2    4e-05
hCoV-19/Australia/QLDID936/2020|EPI_ISL_436098|2020-03-23             36.2    4e-05
hCoV-19/Japan/Donner8/2020|EPI_ISL_438953|2020-04-06                  36.2    4e-05
hCoV-19/Spain/Valencia216/2020|EPI_ISL_436311|2020-03-28              36.2    4e-05
hCoV-19/Shandong/LY003/2020|EPI_ISL_414936|2020-01-23                 36.2    4e-05
hCoV-19/USA/NC_200173/2020|EPI_ISL_424353|2020-04-02                  36.2    4e-05
hCoV-19/USA/AK-PHL037/2020|EPI_ISL_424346|2020-03-21                  36.2    4e-05
hCoV-19/Italy/INMI8/2020|EPI_ISL_424342|2020-03-07                    36.2    4e-05
hCoV-19/Vietnam/IBT-14Mar/2020|EPI_ISL_448222|2020-03-15              36.2    4e-05
hCoV-19/CzechRepublic/IAB_1/2020|EPI_ISL_426883|2020-03-27            36.2    4e-05



Query_5                                                     1      ATGGCAGCTGTGTAGGTCAACC  22
hCoV-19/Taiwan/TSGH-24/2020|EPI_ISL_436099|2020-04-02       29283  ......C...............  29262
hCoV-19/Australia/QLDID936/2020|EPI_ISL_436098|2020-03-23   29282  ......C...............  29261
hCoV-19/Japan/Donner8/2020|EPI_ISL_438953|2020-04-06        29229  ......C...............  29208
hCoV-19/Spain/Valencia216/2020|EPI_ISL_436311|2020-03-28    29236  ......C...............  29215
hCoV-19/Shandong/LY003/2020|EPI_ISL_414936|2020-01-23       29267  ......C...............  29246
hCoV-19/USA/NC_200173/2020|EPI_ISL_424353|2020-04-02        29258  ......C...............  29237
hCoV-19/USA/AK-PHL037/2020|EPI_ISL_424346|2020-03-21        29270  ......C...............  29249
hCoV-19/Italy/INMI8/2020|EPI_ISL_424342|2020-03-07          29258  ......C...............  29237
hCoV-19/Vietnam/IBT-14Mar/2020|EPI_ISL_448222|2020-03-15    29264  ......C...............  29243
hCoV-19/CzechRepublic/IAB_1/2020|EPI_ISL_426883|2020-03-27  29268  ......C...............  29247


Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 3277230


Query= CoV-2-N-TZ

Length=25
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

hCoV-19/Taiwan/TSGH-24/2020|EPI_ISL_436099|2020-04-02                 46.1    6e-08
hCoV-19/Australia/QLDID936/2020|EPI_ISL_436098|2020-03-23             46.1    6e-08
hCoV-19/Japan/Donner8/2020|EPI_ISL_438953|2020-04-06                  46.1    6e-08
hCoV-19/Spain/Valencia216/2020|EPI_ISL_436311|2020-03-28              46.1    6e-08
hCoV-19/Shandong/LY003/2020|EPI_ISL_414936|2020-01-23                 46.1    6e-08
hCoV-19/USA/NC_200173/2020|EPI_ISL_424353|2020-04-02                  46.1    6e-08
hCoV-19/USA/AK-PHL037/2020|EPI_ISL_424346|2020-03-21                  46.1    6e-08
hCoV-19/Italy/INMI8/2020|EPI_ISL_424342|2020-03-07                    46.1    6e-08
hCoV-19/Vietnam/IBT-14Mar/2020|EPI_ISL_448222|2020-03-15              46.1    6e-08
hCoV-19/CzechRepublic/IAB_1/2020|EPI_ISL_426883|2020-03-27            46.1    6e-08



Query_6                                                     2      CATTGGCATGGAAGTCACACCTT  24
hCoV-19/Taiwan/TSGH-24/2020|EPI_ISL_436099|2020-04-02       29230  .......................  29252
hCoV-19/Australia/QLDID936/2020|EPI_ISL_436098|2020-03-23   29229  .......................  29251
hCoV-19/Japan/Donner8/2020|EPI_ISL_438953|2020-04-06        29176  .......................  29198
hCoV-19/Spain/Valencia216/2020|EPI_ISL_436311|2020-03-28    29183  .......................  29205
hCoV-19/Shandong/LY003/2020|EPI_ISL_414936|2020-01-23       29214  .......................  29236
hCoV-19/USA/NC_200173/2020|EPI_ISL_424353|2020-04-02        29205  .......................  29227
hCoV-19/USA/AK-PHL037/2020|EPI_ISL_424346|2020-03-21        29217  .......................  29239
hCoV-19/Italy/INMI8/2020|EPI_ISL_424342|2020-03-07          29205  .......................  29227
hCoV-19/Vietnam/IBT-14Mar/2020|EPI_ISL_448222|2020-03-15    29211  .......................  29233
hCoV-19/CzechRepublic/IAB_1/2020|EPI_ISL_426883|2020-03-27  29215  .......................  29237


Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 4171020


  Database: SARS-coV_2.fasta
    Posted date:  Jun 9, 2020  4:38 PM
  Number of letters in database: 298,040
  Number of sequences in database:  10



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2
